Results 1 - 20 of 266 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21380 | 3' | -57.2 | NC_004812.1 | + | 143261 | 1.11 | 0.001905 |
Target: 5'- cUGGUGGUGGCGCGGAACGACGUGACCu -3' miRNA: 3'- -ACCACCACCGCGCCUUGCUGCACUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 140838 | 0.84 | 0.131072 |
Target: 5'- aGGgaagGGUGGCGaGGAACGACGUG-CCg -3' miRNA: 3'- aCCa---CCACCGCgCCUUGCUGCACuGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 68461 | 0.82 | 0.17222 |
Target: 5'- cGGUGGUGGcCGCGGcgcgcacGAUGGCGUaGGCCa -3' miRNA: 3'- aCCACCACC-GCGCC-------UUGCUGCA-CUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 60905 | 0.77 | 0.312165 |
Target: 5'- cGGUGG-GGCGCGGcaGGCGGCacccaaUGACCa -3' miRNA: 3'- aCCACCaCCGCGCC--UUGCUGc-----ACUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 17405 | 0.76 | 0.348675 |
Target: 5'- gUGGUGGgGGCGgGGGugGugGUGGg- -3' miRNA: 3'- -ACCACCaCCGCgCCUugCugCACUgg -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 17333 | 0.76 | 0.348675 |
Target: 5'- gUGGUGGgGGCGgGGGugGugGUGGg- -3' miRNA: 3'- -ACCACCaCCGCgCCUugCugCACUgg -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 17369 | 0.76 | 0.348675 |
Target: 5'- gUGGUGGgGGCGgGGGugGugGUGGg- -3' miRNA: 3'- -ACCACCaCCGCgCCUugCugCACUgg -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 30430 | 0.76 | 0.356333 |
Target: 5'- aGGUcagGGCGCGGAGCGAgGgGGCCa -3' miRNA: 3'- aCCAccaCCGCGCCUUGCUgCaCUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 93534 | 0.76 | 0.356333 |
Target: 5'- aGGcGG-GGCGCGGGugcgGCGGCGUG-CCg -3' miRNA: 3'- aCCaCCaCCGCGCCU----UGCUGCACuGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 16848 | 0.76 | 0.356333 |
Target: 5'- gGGUGGgaguccgGGCGggcccCGGGAcCGGCGUGGCCc -3' miRNA: 3'- aCCACCa------CCGC-----GCCUU-GCUGCACUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 44199 | 0.75 | 0.396366 |
Target: 5'- gGGUGGggcucggcggcGGCGCGGAcggGCGAacgcgUGUGGCCg -3' miRNA: 3'- aCCACCa----------CCGCGCCU---UGCU-----GCACUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 55306 | 0.75 | 0.404713 |
Target: 5'- aGGUGGgcucGGCGCGGGcCGACGcccgGGCg -3' miRNA: 3'- aCCACCa---CCGCGCCUuGCUGCa---CUGg -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 146971 | 0.75 | 0.413171 |
Target: 5'- gGGUGGgagugGGCGCuGGGGCGAgG-GACUg -3' miRNA: 3'- aCCACCa----CCGCG-CCUUGCUgCaCUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 69601 | 0.75 | 0.421736 |
Target: 5'- cGGcGGUGGCccGCGGGugGugGUGcguGCCc -3' miRNA: 3'- aCCaCCACCG--CGCCUugCugCAC---UGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 98495 | 0.74 | 0.439183 |
Target: 5'- gGGUGGggcGGCGCGGGGCGcCGgGuCCc -3' miRNA: 3'- aCCACCa--CCGCGCCUUGCuGCaCuGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 136872 | 0.74 | 0.448059 |
Target: 5'- gGGcUGGUGGCGCGGAuCGAgGgucugcccgacGGCCg -3' miRNA: 3'- aCC-ACCACCGCGCCUuGCUgCa----------CUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 30640 | 0.74 | 0.448059 |
Target: 5'- cGGacgcGG-GGCGCGGGACGcGCGgGACCg -3' miRNA: 3'- aCCa---CCaCCGCGCCUUGC-UGCaCUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 156148 | 0.74 | 0.448059 |
Target: 5'- cGGacgcGG-GGCGCGGGACGcGCGgGACCg -3' miRNA: 3'- aCCa---CCaCCGCGCCUUGC-UGCaCUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 87070 | 0.74 | 0.457035 |
Target: 5'- cGGgcaGG-GGCGCGGGGgGGCGgccgGACCc -3' miRNA: 3'- aCCa--CCaCCGCGCCUUgCUGCa---CUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 81101 | 0.74 | 0.466105 |
Target: 5'- -cGUGGcGGUGCGGGcgGCGugGUGgGCCg -3' miRNA: 3'- acCACCaCCGCGCCU--UGCugCAC-UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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