miRNA display CGI


Results 1 - 20 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21380 3' -57.2 NC_004812.1 + 108040 0.66 0.872686
Target:  5'- cGGUGGaGGUGaCGGcgcuguucgcgacgGACGgcuGCGUGAUCa -3'
miRNA:   3'- aCCACCaCCGC-GCC--------------UUGC---UGCACUGG- -5'
21380 3' -57.2 NC_004812.1 + 19156 0.66 0.867638
Target:  5'- cGG-GG-GGCGCGGcGGCGGCGcccCCa -3'
miRNA:   3'- aCCaCCaCCGCGCC-UUGCUGCacuGG- -5'
21380 3' -57.2 NC_004812.1 + 78082 0.66 0.874819
Target:  5'- -cGUGGaagucguccgUGGUGCGGA-UGACGUcgcgGGCCa -3'
miRNA:   3'- acCACC----------ACCGCGCCUuGCUGCA----CUGG- -5'
21380 3' -57.2 NC_004812.1 + 117364 0.66 0.87411
Target:  5'- cGGUGGggcGGCcgcgcccggcagcGCGGcGGCGGCGccGGCCc -3'
miRNA:   3'- aCCACCa--CCG-------------CGCC-UUGCUGCa-CUGG- -5'
21380 3' -57.2 NC_004812.1 + 147109 0.66 0.881793
Target:  5'- aGGUGGcGGCaGUGGGugGA-GUacaGGCCu -3'
miRNA:   3'- aCCACCaCCG-CGCCUugCUgCA---CUGG- -5'
21380 3' -57.2 NC_004812.1 + 72125 0.66 0.874819
Target:  5'- cGGUGGaGGCGgguCGGGAgGguGCGgGGCCg -3'
miRNA:   3'- aCCACCaCCGC---GCCUUgC--UGCaCUGG- -5'
21380 3' -57.2 NC_004812.1 + 6831 0.66 0.881793
Target:  5'- gGGUGGggGGCgGCGGcccucgcggucGGCGAgGcGGCCc -3'
miRNA:   3'- aCCACCa-CCG-CGCC-----------UUGCUgCaCUGG- -5'
21380 3' -57.2 NC_004812.1 + 113150 0.66 0.881793
Target:  5'- aGGcuccGG-GGCGCGaGGGuCGGCGgagGGCCg -3'
miRNA:   3'- aCCa---CCaCCGCGC-CUU-GCUGCa--CUGG- -5'
21380 3' -57.2 NC_004812.1 + 72057 0.66 0.867638
Target:  5'- gGGUcGGgGGCGCugGGGGCGGCGgcuguuucGCCg -3'
miRNA:   3'- aCCA-CCaCCGCG--CCUUGCUGCac------UGG- -5'
21380 3' -57.2 NC_004812.1 + 78613 0.66 0.867638
Target:  5'- cGGUGGaagcggcGGCGgGGGGCuguucguuggaaGACGgGGCCg -3'
miRNA:   3'- aCCACCa------CCGCgCCUUG------------CUGCaCUGG- -5'
21380 3' -57.2 NC_004812.1 + 81395 0.66 0.881793
Target:  5'- cUGGUaGGcGGCGCaGuauCGAC-UGACCg -3'
miRNA:   3'- -ACCA-CCaCCGCGcCuu-GCUGcACUGG- -5'
21380 3' -57.2 NC_004812.1 + 46290 0.66 0.874819
Target:  5'- cGG-GGcGGC-CGGAggccGCGGCG-GGCCg -3'
miRNA:   3'- aCCaCCaCCGcGCCU----UGCUGCaCUGG- -5'
21380 3' -57.2 NC_004812.1 + 41562 0.66 0.881793
Target:  5'- ------cGGCGCGGGcugaGCGACGUGcaGCCc -3'
miRNA:   3'- accaccaCCGCGCCU----UGCUGCAC--UGG- -5'
21380 3' -57.2 NC_004812.1 + 21713 0.66 0.874819
Target:  5'- cGGUGGUGuagaucaccaCGCGGuacucgccccACGugGUGACg -3'
miRNA:   3'- aCCACCACc---------GCGCCu---------UGCugCACUGg -5'
21380 3' -57.2 NC_004812.1 + 71936 0.66 0.881793
Target:  5'- cGGcgaGGacGGCGCGGGGCGGCccuGCCg -3'
miRNA:   3'- aCCa--CCa-CCGCGCCUUGCUGcacUGG- -5'
21380 3' -57.2 NC_004812.1 + 59653 0.66 0.867638
Target:  5'- ---gGGUGGUGUGGGcgcaGGCGUG-CCg -3'
miRNA:   3'- accaCCACCGCGCCUug--CUGCACuGG- -5'
21380 3' -57.2 NC_004812.1 + 76727 0.66 0.881793
Target:  5'- gGGUGGaGGC-CGGAGa-GCGcGGCCg -3'
miRNA:   3'- aCCACCaCCGcGCCUUgcUGCaCUGG- -5'
21380 3' -57.2 NC_004812.1 + 48139 0.66 0.888555
Target:  5'- gGGUGGccguccucgaGGCGCGGcgccgGGCGGCG--GCCg -3'
miRNA:   3'- aCCACCa---------CCGCGCC-----UUGCUGCacUGG- -5'
21380 3' -57.2 NC_004812.1 + 22757 0.66 0.867638
Target:  5'- gUGGUGGaccUGGUGCguccaggugGGGGCGuuuguCGUGuCCg -3'
miRNA:   3'- -ACCACC---ACCGCG---------CCUUGCu----GCACuGG- -5'
21380 3' -57.2 NC_004812.1 + 146655 0.66 0.867638
Target:  5'- gGGUGG-GGaGgGGAGCGuuG-GACCg -3'
miRNA:   3'- aCCACCaCCgCgCCUUGCugCaCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.