miRNA display CGI


Results 1 - 20 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21380 3' -57.2 NC_004812.1 + 740 0.68 0.776667
Target:  5'- cGGcGGgGGUG-GGGGCGGCGcGACCc -3'
miRNA:   3'- aCCaCCaCCGCgCCUUGCUGCaCUGG- -5'
21380 3' -57.2 NC_004812.1 + 1485 0.68 0.79463
Target:  5'- cGGcgGGcGGCgGCGGAGCGcCGgccGGCCc -3'
miRNA:   3'- aCCa-CCaCCG-CGCCUUGCuGCa--CUGG- -5'
21380 3' -57.2 NC_004812.1 + 2810 0.73 0.522341
Target:  5'- -cGUGGcGGCGCGcGACGGCG-GGCCc -3'
miRNA:   3'- acCACCaCCGCGCcUUGCUGCaCUGG- -5'
21380 3' -57.2 NC_004812.1 + 3078 0.7 0.660902
Target:  5'- cGGUGGgcGGCG-GGAcgACGGCGUGGg- -3'
miRNA:   3'- aCCACCa-CCGCgCCU--UGCUGCACUgg -5'
21380 3' -57.2 NC_004812.1 + 3196 0.67 0.836943
Target:  5'- aGGcGGcGGCGCGGcGCaGCG-GGCCc -3'
miRNA:   3'- aCCaCCaCCGCGCCuUGcUGCaCUGG- -5'
21380 3' -57.2 NC_004812.1 + 3521 0.66 0.888555
Target:  5'- cGGcGGccccgGGgGCGGGgccGCGGCGccgGGCCg -3'
miRNA:   3'- aCCaCCa----CCgCGCCU---UGCUGCa--CUGG- -5'
21380 3' -57.2 NC_004812.1 + 3905 0.68 0.776667
Target:  5'- cGGgcgcGGcGGCGCGG--CGGCGgGGCCg -3'
miRNA:   3'- aCCa---CCaCCGCGCCuuGCUGCaCUGG- -5'
21380 3' -57.2 NC_004812.1 + 4352 0.67 0.828808
Target:  5'- cGGcGGcucaUGGCGaCGGcggcGGCGGCGUGcGCCa -3'
miRNA:   3'- aCCaCC----ACCGC-GCC----UUGCUGCAC-UGG- -5'
21380 3' -57.2 NC_004812.1 + 4620 0.67 0.836943
Target:  5'- gGGUGGcccuuaGGgGCGGGGgGGCGgGACg -3'
miRNA:   3'- aCCACCa-----CCgCGCCUUgCUGCaCUGg -5'
21380 3' -57.2 NC_004812.1 + 4780 0.73 0.493857
Target:  5'- cGGUGGgggagGGgGCGGGGCGAgGgcugGugCg -3'
miRNA:   3'- aCCACCa----CCgCGCCUUGCUgCa---CugG- -5'
21380 3' -57.2 NC_004812.1 + 5125 0.71 0.640909
Target:  5'- cGGgGGgcgGGCGCGGA--GGCGggagGGCCg -3'
miRNA:   3'- aCCaCCa--CCGCGCCUugCUGCa---CUGG- -5'
21380 3' -57.2 NC_004812.1 + 5352 0.71 0.62089
Target:  5'- cGGcGGgGGCGCGGcGGCGuCGaUGACCc -3'
miRNA:   3'- aCCaCCaCCGCGCC-UUGCuGC-ACUGG- -5'
21380 3' -57.2 NC_004812.1 + 5464 0.67 0.842532
Target:  5'- aUGGaGGccagcagggccagcUGGCGCGGGgacacggcgGCGGCGgcGGCCg -3'
miRNA:   3'- -ACCaCC--------------ACCGCGCCU---------UGCUGCa-CUGG- -5'
21380 3' -57.2 NC_004812.1 + 5993 0.69 0.720085
Target:  5'- gGGUGGUaGGCGCcggGGGGCGAgGggaaggggGACg -3'
miRNA:   3'- aCCACCA-CCGCG---CCUUGCUgCa-------CUGg -5'
21380 3' -57.2 NC_004812.1 + 6831 0.66 0.881793
Target:  5'- gGGUGGggGGCgGCGGcccucgcggucGGCGAgGcGGCCc -3'
miRNA:   3'- aCCACCa-CCG-CGCC-----------UUGCUgCaCUGG- -5'
21380 3' -57.2 NC_004812.1 + 6904 0.69 0.729746
Target:  5'- gUGGUGGUcucggGGCGCGcuGCGcccGCGgGGCCg -3'
miRNA:   3'- -ACCACCA-----CCGCGCcuUGC---UGCaCUGG- -5'
21380 3' -57.2 NC_004812.1 + 7687 0.73 0.507065
Target:  5'- gGGUGGgcgGGCGCGGGggucgcgccgaguccGCGGCGgggGucuCCg -3'
miRNA:   3'- aCCACCa--CCGCGCCU---------------UGCUGCa--Cu--GG- -5'
21380 3' -57.2 NC_004812.1 + 9089 0.66 0.874819
Target:  5'- aGGcGGcGGCGCGaaGACGGCGccucggGGCCa -3'
miRNA:   3'- aCCaCCaCCGCGCc-UUGCUGCa-----CUGG- -5'
21380 3' -57.2 NC_004812.1 + 10980 0.72 0.590941
Target:  5'- aGGUGGccgugcUGGCGCGcccCGGCG-GACCa -3'
miRNA:   3'- aCCACC------ACCGCGCcuuGCUGCaCUGG- -5'
21380 3' -57.2 NC_004812.1 + 11925 0.73 0.512772
Target:  5'- gGGUGG-GGCgGCGGGGCgGGgGUGGCg -3'
miRNA:   3'- aCCACCaCCG-CGCCUUG-CUgCACUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.