miRNA display CGI


Results 1 - 20 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21380 3' -57.2 NC_004812.1 + 156148 0.74 0.448059
Target:  5'- cGGacgcGG-GGCGCGGGACGcGCGgGACCg -3'
miRNA:   3'- aCCa---CCaCCGCGCCUUGC-UGCaCUGG- -5'
21380 3' -57.2 NC_004812.1 + 155732 0.69 0.748817
Target:  5'- gGGUGGggGGCGCGcgcGGGCGGggcuCGcGGCCg -3'
miRNA:   3'- aCCACCa-CCGCGC---CUUGCU----GCaCUGG- -5'
21380 3' -57.2 NC_004812.1 + 155419 0.71 0.61089
Target:  5'- gGcGUGGUGGCgGCGGcGACGGCGacGGCg -3'
miRNA:   3'- aC-CACCACCG-CGCC-UUGCUGCa-CUGg -5'
21380 3' -57.2 NC_004812.1 + 155285 0.69 0.767497
Target:  5'- cGG-GGaGGgGCGGGgcGCGGCGgGGCCc -3'
miRNA:   3'- aCCaCCaCCgCGCCU--UGCUGCaCUGG- -5'
21380 3' -57.2 NC_004812.1 + 155215 0.67 0.860254
Target:  5'- cGGcgagagGG-GGCGCGGcGCGGgGcgGGCCg -3'
miRNA:   3'- aCCa-----CCaCCGCGCCuUGCUgCa-CUGG- -5'
21380 3' -57.2 NC_004812.1 + 153320 0.67 0.8449
Target:  5'- gGGUGGacGCGCGGugggcccgGGCGGCGUcuCCu -3'
miRNA:   3'- aCCACCacCGCGCC--------UUGCUGCAcuGG- -5'
21380 3' -57.2 NC_004812.1 + 153263 0.71 0.61089
Target:  5'- cGG-GGgccggGGCGCGGGgcGCGGCGgccccucgGGCCc -3'
miRNA:   3'- aCCaCCa----CCGCGCCU--UGCUGCa-------CUGG- -5'
21380 3' -57.2 NC_004812.1 + 153182 0.7 0.700556
Target:  5'- cGG-GG-GGCGCGGcGGCGcCGgagGGCCg -3'
miRNA:   3'- aCCaCCaCCGCGCC-UUGCuGCa--CUGG- -5'
21380 3' -57.2 NC_004812.1 + 153125 0.69 0.747873
Target:  5'- cGG-GGgcgGGCGCGGGgggcucgGCGGCGgGGCg -3'
miRNA:   3'- aCCaCCa--CCGCGCCU-------UGCUGCaCUGg -5'
21380 3' -57.2 NC_004812.1 + 148948 0.72 0.571106
Target:  5'- cGGUGGUcggGGCGCGaGAGCGGguCGUcGGCg -3'
miRNA:   3'- aCCACCA---CCGCGC-CUUGCU--GCA-CUGg -5'
21380 3' -57.2 NC_004812.1 + 148522 0.71 0.6309
Target:  5'- aGGgggGGcGGCGCGGGccgccgggcGCGGCGgggucgcgGGCCg -3'
miRNA:   3'- aCCa--CCaCCGCGCCU---------UGCUGCa-------CUGG- -5'
21380 3' -57.2 NC_004812.1 + 148265 0.66 0.87411
Target:  5'- cGGUGGggcGGCcgcgcccggcagcGCGGcGGCGGCGccGGCCc -3'
miRNA:   3'- aCCACCa--CCG-------------CGCC-UUGCUGCa-CUGG- -5'
21380 3' -57.2 NC_004812.1 + 147983 0.66 0.888555
Target:  5'- -cGUGcucaUGGCGCcGGGCGGCGgGGCCg -3'
miRNA:   3'- acCACc---ACCGCGcCUUGCUGCaCUGG- -5'
21380 3' -57.2 NC_004812.1 + 147906 0.68 0.776667
Target:  5'- aGG-GG-GGCGCGGAG-GGCGUcccGCCg -3'
miRNA:   3'- aCCaCCaCCGCGCCUUgCUGCAc--UGG- -5'
21380 3' -57.2 NC_004812.1 + 147856 0.73 0.512772
Target:  5'- cGGUGGUGGUGUGu-GCGGCGcGcCCg -3'
miRNA:   3'- aCCACCACCGCGCcuUGCUGCaCuGG- -5'
21380 3' -57.2 NC_004812.1 + 147709 0.71 0.650913
Target:  5'- gGGUcGuGUGGCGCGGGGgGcuguACGUGAUg -3'
miRNA:   3'- aCCA-C-CACCGCGCCUUgC----UGCACUGg -5'
21380 3' -57.2 NC_004812.1 + 147564 0.67 0.8449
Target:  5'- gGGUGccGGCGCGGccgcguACGGCaUGGCUc -3'
miRNA:   3'- aCCACcaCCGCGCCu-----UGCUGcACUGG- -5'
21380 3' -57.2 NC_004812.1 + 147220 0.66 0.874819
Target:  5'- gGGcGuUGGC-CGGAAauagGGCGUGGCCg -3'
miRNA:   3'- aCCaCcACCGcGCCUUg---CUGCACUGG- -5'
21380 3' -57.2 NC_004812.1 + 147109 0.66 0.881793
Target:  5'- aGGUGGcGGCaGUGGGugGA-GUacaGGCCu -3'
miRNA:   3'- aCCACCaCCG-CGCCUugCUgCA---CUGG- -5'
21380 3' -57.2 NC_004812.1 + 146971 0.75 0.413171
Target:  5'- gGGUGGgagugGGCGCuGGGGCGAgG-GACUg -3'
miRNA:   3'- aCCACCa----CCGCG-CCUUGCUgCaCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.