miRNA display CGI


Results 1 - 20 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21380 3' -57.2 NC_004812.1 + 106495 0.72 0.600904
Target:  5'- gUGGcUGG-GGCGCGGGuccGCGGCGcggGGCg -3'
miRNA:   3'- -ACC-ACCaCCGCGCCU---UGCUGCa--CUGg -5'
21380 3' -57.2 NC_004812.1 + 116955 0.73 0.512772
Target:  5'- cGGUGGUGGUGUGu-GCGGCGcGcCCg -3'
miRNA:   3'- aCCACCACCGCGCcuUGCUGCaCuGG- -5'
21380 3' -57.2 NC_004812.1 + 128318 0.73 0.522341
Target:  5'- -cGUGGcGGCGCGcGACGGCG-GGCCc -3'
miRNA:   3'- acCACCaCCGCGCcUUGCUGCaCUGG- -5'
21380 3' -57.2 NC_004812.1 + 106230 0.72 0.550458
Target:  5'- cGGUGGUgcacgcgcccccGGCGUcgGGGGCGcccuaccGCGUGGCCc -3'
miRNA:   3'- aCCACCA------------CCGCG--CCUUGC-------UGCACUGG- -5'
21380 3' -57.2 NC_004812.1 + 81941 0.72 0.555355
Target:  5'- aGGUaGGcGGCGCGGcACGugGUccgcagggcguccccGACCa -3'
miRNA:   3'- aCCA-CCaCCGCGCCuUGCugCA---------------CUGG- -5'
21380 3' -57.2 NC_004812.1 + 110352 0.72 0.560264
Target:  5'- cGG-GGUGGCGCGGGugauccaACaGGCGgugcugcugGACCg -3'
miRNA:   3'- aCCaCCACCGCGCCU-------UG-CUGCa--------CUGG- -5'
21380 3' -57.2 NC_004812.1 + 71070 0.72 0.571106
Target:  5'- cGGUucgGGcGGCGCGGGGCGuuCGgcGACCg -3'
miRNA:   3'- aCCA---CCaCCGCGCCUUGCu-GCa-CUGG- -5'
21380 3' -57.2 NC_004812.1 + 148948 0.72 0.571106
Target:  5'- cGGUGGUcggGGCGCGaGAGCGGguCGUcGGCg -3'
miRNA:   3'- aCCACCA---CCGCGC-CUUGCU--GCA-CUGg -5'
21380 3' -57.2 NC_004812.1 + 25464 0.72 0.590941
Target:  5'- gUGGUGGUcGCGCGGGcacACGAgGaUGuCCa -3'
miRNA:   3'- -ACCACCAcCGCGCCU---UGCUgC-ACuGG- -5'
21380 3' -57.2 NC_004812.1 + 53621 0.73 0.512772
Target:  5'- gUGGUGGagagGGCggacgaggagaaGCGGAACGAgG-GGCCg -3'
miRNA:   3'- -ACCACCa---CCG------------CGCCUUGCUgCaCUGG- -5'
21380 3' -57.2 NC_004812.1 + 90408 0.73 0.508014
Target:  5'- cGGUGGuugUcuugucgucugugcgGGCGCGGGACGGCGgggugggaaugacugGACCg -3'
miRNA:   3'- aCCACC---A---------------CCGCGCCUUGCUGCa--------------CUGG- -5'
21380 3' -57.2 NC_004812.1 + 7687 0.73 0.507065
Target:  5'- gGGUGGgcgGGCGCGGGggucgcgccgaguccGCGGCGgggGucuCCg -3'
miRNA:   3'- aCCACCa--CCGCGCCU---------------UGCUGCa--Cu--GG- -5'
21380 3' -57.2 NC_004812.1 + 30430 0.76 0.356333
Target:  5'- aGGUcagGGCGCGGAGCGAgGgGGCCa -3'
miRNA:   3'- aCCAccaCCGCGCCUUGCUgCaCUGG- -5'
21380 3' -57.2 NC_004812.1 + 69601 0.75 0.421736
Target:  5'- cGGcGGUGGCccGCGGGugGugGUGcguGCCc -3'
miRNA:   3'- aCCaCCACCG--CGCCUugCugCAC---UGG- -5'
21380 3' -57.2 NC_004812.1 + 98495 0.74 0.439183
Target:  5'- gGGUGGggcGGCGCGGGGCGcCGgGuCCc -3'
miRNA:   3'- aCCACCa--CCGCGCCUUGCuGCaCuGG- -5'
21380 3' -57.2 NC_004812.1 + 156148 0.74 0.448059
Target:  5'- cGGacgcGG-GGCGCGGGACGcGCGgGACCg -3'
miRNA:   3'- aCCa---CCaCCGCGCCUUGC-UGCaCUGG- -5'
21380 3' -57.2 NC_004812.1 + 81101 0.74 0.466105
Target:  5'- -cGUGGcGGUGCGGGcgGCGugGUGgGCCg -3'
miRNA:   3'- acCACCaCCGCGCCU--UGCugCAC-UGG- -5'
21380 3' -57.2 NC_004812.1 + 65367 0.73 0.493857
Target:  5'- aGGUcgaggagacGGUGGCGCGGAuCGACGcgcuCCg -3'
miRNA:   3'- aCCA---------CCACCGCGCCUuGCUGCacu-GG- -5'
21380 3' -57.2 NC_004812.1 + 4780 0.73 0.493857
Target:  5'- cGGUGGgggagGGgGCGGGGCGAgGgcugGugCg -3'
miRNA:   3'- aCCACCa----CCgCGCCUUGCUgCa---CugG- -5'
21380 3' -57.2 NC_004812.1 + 144856 0.73 0.503276
Target:  5'- aGGUGGUgugGGUGCGGuuCGACGUccCCg -3'
miRNA:   3'- aCCACCA---CCGCGCCuuGCUGCAcuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.