miRNA display CGI


Results 1 - 20 of 266 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21380 3' -57.2 NC_004812.1 + 143261 1.11 0.001905
Target:  5'- cUGGUGGUGGCGCGGAACGACGUGACCu -3'
miRNA:   3'- -ACCACCACCGCGCCUUGCUGCACUGG- -5'
21380 3' -57.2 NC_004812.1 + 38588 0.73 0.507065
Target:  5'- gGGUGGgcgGGCGCGGGggucgcgccgaguccGCGGCGgggGucuCCg -3'
miRNA:   3'- aCCACCa--CCGCGCCU---------------UGCUGCa--Cu--GG- -5'
21380 3' -57.2 NC_004812.1 + 147856 0.73 0.512772
Target:  5'- cGGUGGUGGUGUGu-GCGGCGcGcCCg -3'
miRNA:   3'- aCCACCACCGCGCcuUGCUGCaCuGG- -5'
21380 3' -57.2 NC_004812.1 + 94697 0.66 0.903894
Target:  5'- gGGUGG-GGCGaGGucuugguugccuagcAACGACG-GAUCa -3'
miRNA:   3'- aCCACCaCCGCgCC---------------UUGCUGCaCUGG- -5'
21380 3' -57.2 NC_004812.1 + 17369 0.76 0.348675
Target:  5'- gUGGUGGgGGCGgGGGugGugGUGGg- -3'
miRNA:   3'- -ACCACCaCCGCgCCUugCugCACUgg -5'
21380 3' -57.2 NC_004812.1 + 17405 0.76 0.348675
Target:  5'- gUGGUGGgGGCGgGGGugGugGUGGg- -3'
miRNA:   3'- -ACCACCaCCGCgCCUugCugCACUgg -5'
21380 3' -57.2 NC_004812.1 + 16848 0.76 0.356333
Target:  5'- gGGUGGgaguccgGGCGggcccCGGGAcCGGCGUGGCCc -3'
miRNA:   3'- aCCACCa------CCGC-----GCCUU-GCUGCACUGG- -5'
21380 3' -57.2 NC_004812.1 + 44199 0.75 0.396366
Target:  5'- gGGUGGggcucggcggcGGCGCGGAcggGCGAacgcgUGUGGCCg -3'
miRNA:   3'- aCCACCa----------CCGCGCCU---UGCU-----GCACUGG- -5'
21380 3' -57.2 NC_004812.1 + 136872 0.74 0.448059
Target:  5'- gGGcUGGUGGCGCGGAuCGAgGgucugcccgacGGCCg -3'
miRNA:   3'- aCC-ACCACCGCGCCUuGCUgCa----------CUGG- -5'
21380 3' -57.2 NC_004812.1 + 52827 0.73 0.503276
Target:  5'- -cGUGGUGGCcUGGGGCGACGgccacacgcccGACCg -3'
miRNA:   3'- acCACCACCGcGCCUUGCUGCa----------CUGG- -5'
21380 3' -57.2 NC_004812.1 + 87070 0.74 0.457035
Target:  5'- cGGgcaGG-GGCGCGGGGgGGCGgccgGACCc -3'
miRNA:   3'- aCCa--CCaCCGCGCCUUgCUGCa---CUGG- -5'
21380 3' -57.2 NC_004812.1 + 146971 0.75 0.413171
Target:  5'- gGGUGGgagugGGCGCuGGGGCGAgG-GACUg -3'
miRNA:   3'- aCCACCa----CCGCG-CCUUGCUgCaCUGG- -5'
21380 3' -57.2 NC_004812.1 + 68461 0.82 0.17222
Target:  5'- cGGUGGUGGcCGCGGcgcgcacGAUGGCGUaGGCCa -3'
miRNA:   3'- aCCACCACC-GCGCC-------UUGCUGCA-CUGG- -5'
21380 3' -57.2 NC_004812.1 + 71817 0.74 0.474348
Target:  5'- aGGUGGUGGCGgaaGGGggaggguGCGGCGgccgggcGGCCg -3'
miRNA:   3'- aCCACCACCGCg--CCU-------UGCUGCa------CUGG- -5'
21380 3' -57.2 NC_004812.1 + 60905 0.77 0.312165
Target:  5'- cGGUGG-GGCGCGGcaGGCGGCacccaaUGACCa -3'
miRNA:   3'- aCCACCaCCGCGCC--UUGCUGc-----ACUGG- -5'
21380 3' -57.2 NC_004812.1 + 55306 0.75 0.404713
Target:  5'- aGGUGGgcucGGCGCGGGcCGACGcccgGGCg -3'
miRNA:   3'- aCCACCa---CCGCGCCUuGCUGCa---CUGg -5'
21380 3' -57.2 NC_004812.1 + 35681 0.73 0.493857
Target:  5'- cGGUGGgggagGGgGCGGGGCGAgGgcugGugCg -3'
miRNA:   3'- aCCACCa----CCgCGCCUUGCUgCa---CugG- -5'
21380 3' -57.2 NC_004812.1 + 11925 0.73 0.512772
Target:  5'- gGGUGG-GGCgGCGGGGCgGGgGUGGCg -3'
miRNA:   3'- aCCACCaCCG-CGCCUUG-CUgCACUGg -5'
21380 3' -57.2 NC_004812.1 + 17333 0.76 0.348675
Target:  5'- gUGGUGGgGGCGgGGGugGugGUGGg- -3'
miRNA:   3'- -ACCACCaCCGCgCCUugCugCACUgg -5'
21380 3' -57.2 NC_004812.1 + 93534 0.76 0.356333
Target:  5'- aGGcGG-GGCGCGGGugcgGCGGCGUG-CCg -3'
miRNA:   3'- aCCaCCaCCGCGCCU----UGCUGCACuGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.