miRNA display CGI


Results 41 - 60 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21380 5' -57.3 NC_004812.1 + 103767 0.66 0.874569
Target:  5'- -gGGCCGcGGUCggGCGuGUGGCCGucccCCAGGc -3'
miRNA:   3'- ugUCGGU-CUAG--CGC-CACUGGU----GGUCC- -5'
21380 5' -57.3 NC_004812.1 + 74068 0.66 0.852207
Target:  5'- aGCGGCgGGcgCGCGcG-GGCCGCCucGGc -3'
miRNA:   3'- -UGUCGgUCuaGCGC-CaCUGGUGGu-CC- -5'
21380 5' -57.3 NC_004812.1 + 83353 0.66 0.881608
Target:  5'- cACuGUCGGGUcCGCGccGGCC-CCAGGg -3'
miRNA:   3'- -UGuCGGUCUA-GCGCcaCUGGuGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 93536 0.66 0.852207
Target:  5'- aGCGGCCGGAgggggcCGUGGgGGCggaGCCAGa -3'
miRNA:   3'- -UGUCGGUCUa-----GCGCCaCUGg--UGGUCc -5'
21380 5' -57.3 NC_004812.1 + 73050 0.66 0.874569
Target:  5'- -aGGCCGGGUCGCuGcgcagGGCCACgacgaCGGGg -3'
miRNA:   3'- ugUCGGUCUAGCGcCa----CUGGUG-----GUCC- -5'
21380 5' -57.3 NC_004812.1 + 35581 0.66 0.867319
Target:  5'- gGCGGCgGGGgcaccCGaCGGcGACCGCCgAGGc -3'
miRNA:   3'- -UGUCGgUCUa----GC-GCCaCUGGUGG-UCC- -5'
21380 5' -57.3 NC_004812.1 + 80046 0.66 0.85143
Target:  5'- cACGGCCAGucccgagagcacgGUCGaGGcGGCCGuCCGGGc -3'
miRNA:   3'- -UGUCGGUC-------------UAGCgCCaCUGGU-GGUCC- -5'
21380 5' -57.3 NC_004812.1 + 60485 0.66 0.874569
Target:  5'- cCGGCCAGggCGCGGUuGAagaaCGgaCGGGg -3'
miRNA:   3'- uGUCGGUCuaGCGCCA-CUg---GUg-GUCC- -5'
21380 5' -57.3 NC_004812.1 + 72489 0.66 0.867319
Target:  5'- gGCGGCgCcucgGGGUCGgGGggcgcgccGCCGCCGGGg -3'
miRNA:   3'- -UGUCG-G----UCUAGCgCCac------UGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 119492 0.67 0.844357
Target:  5'- cGCGGCggCAGGg-GCGGcguccgcgGGCCGCCGGGc -3'
miRNA:   3'- -UGUCG--GUCUagCGCCa-------CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 76422 0.67 0.839556
Target:  5'- cCAGCCGGGUCGCcuugacguagcccgcGGcgcUGuCCGCgAGGg -3'
miRNA:   3'- uGUCGGUCUAGCG---------------CC---ACuGGUGgUCC- -5'
21380 5' -57.3 NC_004812.1 + 6494 0.67 0.844357
Target:  5'- uACAGgCaAGGgggggcCGCGGacACCACCAGGa -3'
miRNA:   3'- -UGUCgG-UCUa-----GCGCCacUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 76485 0.67 0.844357
Target:  5'- gGCAcGCCGGAUCcCGGacGGCCGggcUCAGGg -3'
miRNA:   3'- -UGU-CGGUCUAGcGCCa-CUGGU---GGUCC- -5'
21380 5' -57.3 NC_004812.1 + 43871 0.67 0.844357
Target:  5'- uCGGCCAGGUCGaaccgcaGGgaGGCgGCgCAGGg -3'
miRNA:   3'- uGUCGGUCUAGCg------CCa-CUGgUG-GUCC- -5'
21380 5' -57.3 NC_004812.1 + 133438 0.67 0.798909
Target:  5'- uGCAGCacguacaCGGUGugCGCCAGGg -3'
miRNA:   3'- -UGUCGgucuagcGCCACugGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 27564 0.67 0.83632
Target:  5'- cACGGCCAGcuuguguUCGCGGaUGAgcuCCACCu-- -3'
miRNA:   3'- -UGUCGGUCu------AGCGCC-ACU---GGUGGucc -5'
21380 5' -57.3 NC_004812.1 + 142617 0.67 0.801557
Target:  5'- uCAGCCucgugucGGAcUCGCuccUGGCCGCCGGGg -3'
miRNA:   3'- uGUCGG-------UCU-AGCGcc-ACUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 74104 0.67 0.802437
Target:  5'- aGCAGCgCcccgAGcUUGuCGGUGACgGCCGGGa -3'
miRNA:   3'- -UGUCG-G----UCuAGC-GCCACUGgUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 58349 0.67 0.802437
Target:  5'- cCA-CCAGcgCGCGGgucccGGCCuCCAGGg -3'
miRNA:   3'- uGUcGGUCuaGCGCCa----CUGGuGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 122456 0.67 0.801557
Target:  5'- gGCGGCgGGggCGCGGgcgccccUGGCgggCGCCGGGu -3'
miRNA:   3'- -UGUCGgUCuaGCGCC-------ACUG---GUGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.