miRNA display CGI


Results 21 - 40 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21380 5' -57.3 NC_004812.1 + 35581 0.66 0.867319
Target:  5'- gGCGGCgGGGgcaccCGaCGGcGACCGCCgAGGc -3'
miRNA:   3'- -UGUCGgUCUa----GC-GCCaCUGGUGG-UCC- -5'
21380 5' -57.3 NC_004812.1 + 50152 0.66 0.859863
Target:  5'- cGCAGCUGGAgCGCGuGcuggagacGGCCGCCAGc -3'
miRNA:   3'- -UGUCGGUCUaGCGC-Ca-------CUGGUGGUCc -5'
21380 5' -57.3 NC_004812.1 + 80259 0.66 0.852207
Target:  5'- gGCGGCCGcggaccuggcGGUgGCGGUGcggcgggagaACCcCCAGGc -3'
miRNA:   3'- -UGUCGGU----------CUAgCGCCAC----------UGGuGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 96855 0.66 0.852207
Target:  5'- gACGGCgGGGugaUCGUc--GGCCGCCAGGa -3'
miRNA:   3'- -UGUCGgUCU---AGCGccaCUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 60485 0.66 0.874569
Target:  5'- cCGGCCAGggCGCGGUuGAagaaCGgaCGGGg -3'
miRNA:   3'- uGUCGGUCuaGCGCCA-CUg---GUg-GUCC- -5'
21380 5' -57.3 NC_004812.1 + 18197 0.66 0.884363
Target:  5'- gGCAGCCccccgcguccaCGCGGUaguaGGCCACCcGGg -3'
miRNA:   3'- -UGUCGGucua-------GCGCCA----CUGGUGGuCC- -5'
21380 5' -57.3 NC_004812.1 + 61041 0.66 0.874569
Target:  5'- cGCGGCCG---UGCGGUuagcccgcucGACCccGCCGGGg -3'
miRNA:   3'- -UGUCGGUcuaGCGCCA----------CUGG--UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 155462 0.66 0.859863
Target:  5'- -gGGCCGGGcUCGC----GCCGCCGGGg -3'
miRNA:   3'- ugUCGGUCU-AGCGccacUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 73050 0.66 0.874569
Target:  5'- -aGGCCGGGUCGCuGcgcagGGCCACgacgaCGGGg -3'
miRNA:   3'- ugUCGGUCUAGCGcCa----CUGGUG-----GUCC- -5'
21380 5' -57.3 NC_004812.1 + 148195 0.66 0.873853
Target:  5'- aGCGGCCucacGGGUCgagggcuGCGGgggGGCCGCUuGGg -3'
miRNA:   3'- -UGUCGG----UCUAG-------CGCCa--CUGGUGGuCC- -5'
21380 5' -57.3 NC_004812.1 + 49430 0.66 0.880913
Target:  5'- nGCcGCCGcGUCGUggacaugucguccGGUGcCCGCCAGGc -3'
miRNA:   3'- -UGuCGGUcUAGCG-------------CCACuGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 126754 0.66 0.874569
Target:  5'- cGCGGagaGGAUC-CGGccucaGGCCACCGGGu -3'
miRNA:   3'- -UGUCgg-UCUAGcGCCa----CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 73228 0.66 0.867319
Target:  5'- gGCGGCCGGccUGCGGaccGCCGCCgcccuGGGg -3'
miRNA:   3'- -UGUCGGUCuaGCGCCac-UGGUGG-----UCC- -5'
21380 5' -57.3 NC_004812.1 + 84655 0.66 0.852207
Target:  5'- cGCGGCgCGcGUCGCGGcagGGCCGCCc-- -3'
miRNA:   3'- -UGUCG-GUcUAGCGCCa--CUGGUGGucc -5'
21380 5' -57.3 NC_004812.1 + 80046 0.66 0.85143
Target:  5'- cACGGCCAGucccgagagcacgGUCGaGGcGGCCGuCCGGGc -3'
miRNA:   3'- -UGUCGGUC-------------UAGCgCCaCUGGU-GGUCC- -5'
21380 5' -57.3 NC_004812.1 + 83353 0.66 0.881608
Target:  5'- cACuGUCGGGUcCGCGccGGCC-CCAGGg -3'
miRNA:   3'- -UGuCGGUCUA-GCGCcaCUGGuGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 72489 0.66 0.867319
Target:  5'- gGCGGCgCcucgGGGUCGgGGggcgcgccGCCGCCGGGg -3'
miRNA:   3'- -UGUCG-G----UCUAGCgCCac------UGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 29953 0.66 0.859863
Target:  5'- -gGGCCGGGcUCGC----GCCGCCGGGg -3'
miRNA:   3'- ugUCGGUCU-AGCGccacUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 88949 0.66 0.867319
Target:  5'- -uGGCgAGGagggCGCGGccGGCgGCCAGGg -3'
miRNA:   3'- ugUCGgUCUa---GCGCCa-CUGgUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 107198 0.66 0.852207
Target:  5'- gGCGGCCcGGGgccacggCGCGG--GCCGCCuGGg -3'
miRNA:   3'- -UGUCGG-UCUa------GCGCCacUGGUGGuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.