miRNA display CGI


Results 21 - 40 of 272 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21380 5' -57.3 NC_004812.1 + 45422 0.74 0.4443
Target:  5'- -aAGCaGGggCGCGGUGGCCACCgucAGGu -3'
miRNA:   3'- ugUCGgUCuaGCGCCACUGGUGG---UCC- -5'
21380 5' -57.3 NC_004812.1 + 39107 0.74 0.4443
Target:  5'- gACGGCCGcGUCGCGGUGGucagguCCacgaGCCAGGc -3'
miRNA:   3'- -UGUCGGUcUAGCGCCACU------GG----UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 37332 0.73 0.462416
Target:  5'- uACAGCCcgcccgGCGGgggGACCGCCGGGa -3'
miRNA:   3'- -UGUCGGucuag-CGCCa--CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 6431 0.73 0.462416
Target:  5'- uACAGCCcgcccgGCGGgggGACCGCCGGGa -3'
miRNA:   3'- -UGUCGGucuag-CGCCa--CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 59140 0.73 0.47162
Target:  5'- -gGGCCAGGUCcUGGUacACCGCCAGGu -3'
miRNA:   3'- ugUCGGUCUAGcGCCAc-UGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 142381 0.73 0.47162
Target:  5'- uCAcCCGGcgCGCcGUGGCCGCCGGGg -3'
miRNA:   3'- uGUcGGUCuaGCGcCACUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 52044 0.73 0.47162
Target:  5'- cACGGCCGuggcGAacaCGCGGgcaucGGCCACCGGGg -3'
miRNA:   3'- -UGUCGGU----CUa--GCGCCa----CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 13010 0.73 0.47162
Target:  5'- cGCcGCCGGAg-GCGGccUGAUCGCCGGGg -3'
miRNA:   3'- -UGuCGGUCUagCGCC--ACUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 30377 0.73 0.480915
Target:  5'- gGCGGCCGGGUCGgGGcucuCCuCCGGGg -3'
miRNA:   3'- -UGUCGGUCUAGCgCCacu-GGuGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 153147 0.73 0.480915
Target:  5'- gGCGGCgGGG-CGCGGgcggggGGCCACgGGGa -3'
miRNA:   3'- -UGUCGgUCUaGCGCCa-----CUGGUGgUCC- -5'
21380 5' -57.3 NC_004812.1 + 122246 0.73 0.480915
Target:  5'- gGCGGCgGGG-CGCGGgcggggGGCCACgGGGa -3'
miRNA:   3'- -UGUCGgUCUaGCGCCa-----CUGGUGgUCC- -5'
21380 5' -57.3 NC_004812.1 + 148109 0.73 0.490298
Target:  5'- gGCAGCCGGcUCG-GGcGGCCGCCGGc -3'
miRNA:   3'- -UGUCGGUCuAGCgCCaCUGGUGGUCc -5'
21380 5' -57.3 NC_004812.1 + 117208 0.73 0.490298
Target:  5'- gGCAGCCGGcUCG-GGcGGCCGCCGGc -3'
miRNA:   3'- -UGUCGGUCuAGCgCCaCUGGUGGUCc -5'
21380 5' -57.3 NC_004812.1 + 19628 0.73 0.499765
Target:  5'- cGCGuCCGGucUCGCGGcgacgugGGCCGCCAGGg -3'
miRNA:   3'- -UGUcGGUCu-AGCGCCa------CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 142193 0.72 0.518936
Target:  5'- -uGGCCGGcgCGgGGcUGGCCGCCGGc -3'
miRNA:   3'- ugUCGGUCuaGCgCC-ACUGGUGGUCc -5'
21380 5' -57.3 NC_004812.1 + 121739 0.72 0.518936
Target:  5'- -gGGCCGGcgCGCGGcgggGGgCGCCGGGc -3'
miRNA:   3'- ugUCGGUCuaGCGCCa---CUgGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 119012 0.72 0.518936
Target:  5'- gACuGCCGGGUgaaCGCGGgcGGCCACCGGc -3'
miRNA:   3'- -UGuCGGUCUA---GCGCCa-CUGGUGGUCc -5'
21380 5' -57.3 NC_004812.1 + 75383 0.72 0.528631
Target:  5'- cGCGGCCAGGgcguccUCGCucgGACaCGCCAGGg -3'
miRNA:   3'- -UGUCGGUCU------AGCGccaCUG-GUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 108760 0.72 0.548213
Target:  5'- uGCGGCUGGGgggCGCGGgggcgccuacGACCugCAGGc -3'
miRNA:   3'- -UGUCGGUCUa--GCGCCa---------CUGGugGUCC- -5'
21380 5' -57.3 NC_004812.1 + 76373 0.72 0.568017
Target:  5'- gACcGCgGGAUCGUGGUcACCgggGCCAGGa -3'
miRNA:   3'- -UGuCGgUCUAGCGCCAcUGG---UGGUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.