Results 21 - 40 of 272 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21380 | 5' | -57.3 | NC_004812.1 | + | 114459 | 0.66 | 0.874569 |
Target: 5'- cACAGuCCAuAUaucccCGgGcGUGGCCGCCGGGg -3' miRNA: 3'- -UGUC-GGUcUA-----GCgC-CACUGGUGGUCC- -5' |
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21380 | 5' | -57.3 | NC_004812.1 | + | 148195 | 0.66 | 0.873853 |
Target: 5'- aGCGGCCucacGGGUCgagggcuGCGGgggGGCCGCUuGGg -3' miRNA: 3'- -UGUCGG----UCUAG-------CGCCa--CUGGUGGuCC- -5' |
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21380 | 5' | -57.3 | NC_004812.1 | + | 84939 | 0.66 | 0.872415 |
Target: 5'- gGCcGCCGGGUCGa-GUGGCUgggggaggcgugggGCCGGGu -3' miRNA: 3'- -UGuCGGUCUAGCgcCACUGG--------------UGGUCC- -5' |
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21380 | 5' | -57.3 | NC_004812.1 | + | 112359 | 0.66 | 0.867319 |
Target: 5'- aGCGGCUAucGGcccUCGCGGUcGCgUACCAGGu -3' miRNA: 3'- -UGUCGGU--CU---AGCGCCAcUG-GUGGUCC- -5' |
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21380 | 5' | -57.3 | NC_004812.1 | + | 88949 | 0.66 | 0.867319 |
Target: 5'- -uGGCgAGGagggCGCGGccGGCgGCCAGGg -3' miRNA: 3'- ugUCGgUCUa---GCGCCa-CUGgUGGUCC- -5' |
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21380 | 5' | -57.3 | NC_004812.1 | + | 73228 | 0.66 | 0.867319 |
Target: 5'- gGCGGCCGGccUGCGGaccGCCGCCgcccuGGGg -3' miRNA: 3'- -UGUCGGUCuaGCGCCac-UGGUGG-----UCC- -5' |
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21380 | 5' | -57.3 | NC_004812.1 | + | 72489 | 0.66 | 0.867319 |
Target: 5'- gGCGGCgCcucgGGGUCGgGGggcgcgccGCCGCCGGGg -3' miRNA: 3'- -UGUCG-G----UCUAGCgCCac------UGGUGGUCC- -5' |
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21380 | 5' | -57.3 | NC_004812.1 | + | 35581 | 0.66 | 0.867319 |
Target: 5'- gGCGGCgGGGgcaccCGaCGGcGACCGCCgAGGc -3' miRNA: 3'- -UGUCGgUCUa----GC-GCCaCUGGUGG-UCC- -5' |
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21380 | 5' | -57.3 | NC_004812.1 | + | 19568 | 0.66 | 0.867319 |
Target: 5'- cGCGGCCGacgCGCacuggGGUGuguccuggaucGCCGCCAGGc -3' miRNA: 3'- -UGUCGGUcuaGCG-----CCAC-----------UGGUGGUCC- -5' |
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21380 | 5' | -57.3 | NC_004812.1 | + | 19635 | 0.66 | 0.865103 |
Target: 5'- cCGGuCCAGG-CGCucuagcuccuguguGGUgaGACCGCCGGGg -3' miRNA: 3'- uGUC-GGUCUaGCG--------------CCA--CUGGUGGUCC- -5' |
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21380 | 5' | -57.3 | NC_004812.1 | + | 81328 | 0.66 | 0.86287 |
Target: 5'- -gGGCCA--UCGCcucGGUGAucacggcgcgcaggcCCGCCAGGg -3' miRNA: 3'- ugUCGGUcuAGCG---CCACU---------------GGUGGUCC- -5' |
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21380 | 5' | -57.3 | NC_004812.1 | + | 155462 | 0.66 | 0.859863 |
Target: 5'- -gGGCCGGGcUCGC----GCCGCCGGGg -3' miRNA: 3'- ugUCGGUCU-AGCGccacUGGUGGUCC- -5' |
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21380 | 5' | -57.3 | NC_004812.1 | + | 50152 | 0.66 | 0.859863 |
Target: 5'- cGCAGCUGGAgCGCGuGcuggagacGGCCGCCAGc -3' miRNA: 3'- -UGUCGGUCUaGCGC-Ca-------CUGGUGGUCc -5' |
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21380 | 5' | -57.3 | NC_004812.1 | + | 29953 | 0.66 | 0.859863 |
Target: 5'- -gGGCCGGGcUCGC----GCCGCCGGGg -3' miRNA: 3'- ugUCGGUCU-AGCGccacUGGUGGUCC- -5' |
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21380 | 5' | -57.3 | NC_004812.1 | + | 20117 | 0.66 | 0.859863 |
Target: 5'- cGCAG-CGGcgCGCGGgggagcgGACCgggccccgGCCGGGa -3' miRNA: 3'- -UGUCgGUCuaGCGCCa------CUGG--------UGGUCC- -5' |
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21380 | 5' | -57.3 | NC_004812.1 | + | 26112 | 0.66 | 0.852207 |
Target: 5'- gGCAGCgCguccgGGAUCGCGaccgccGACCACCcGGg -3' miRNA: 3'- -UGUCG-G-----UCUAGCGCca----CUGGUGGuCC- -5' |
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21380 | 5' | -57.3 | NC_004812.1 | + | 74068 | 0.66 | 0.852207 |
Target: 5'- aGCGGCgGGcgCGCGcG-GGCCGCCucGGc -3' miRNA: 3'- -UGUCGgUCuaGCGC-CaCUGGUGGu-CC- -5' |
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21380 | 5' | -57.3 | NC_004812.1 | + | 107198 | 0.66 | 0.852207 |
Target: 5'- gGCGGCCcGGGgccacggCGCGG--GCCGCCuGGg -3' miRNA: 3'- -UGUCGG-UCUa------GCGCCacUGGUGGuCC- -5' |
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21380 | 5' | -57.3 | NC_004812.1 | + | 93536 | 0.66 | 0.852207 |
Target: 5'- aGCGGCCGGAgggggcCGUGGgGGCggaGCCAGa -3' miRNA: 3'- -UGUCGGUCUa-----GCGCCaCUGg--UGGUCc -5' |
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21380 | 5' | -57.3 | NC_004812.1 | + | 126049 | 0.66 | 0.852207 |
Target: 5'- -gAGCCGGAagGCGGcGACgCGCCGc- -3' miRNA: 3'- ugUCGGUCUagCGCCaCUG-GUGGUcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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