miRNA display CGI


Results 41 - 60 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21380 5' -57.3 NC_004812.1 + 136690 0.66 0.852207
Target:  5'- uCGGCCGccggCGCGGUGgcggcggcgcggGCCGCCGGu -3'
miRNA:   3'- uGUCGGUcua-GCGCCAC------------UGGUGGUCc -5'
21380 5' -57.3 NC_004812.1 + 14622 0.66 0.852207
Target:  5'- uGCAGCCGGGgcacccgCGCGGccuccagccggUGcuCCGCCAGc -3'
miRNA:   3'- -UGUCGGUCUa------GCGCC-----------ACu-GGUGGUCc -5'
21380 5' -57.3 NC_004812.1 + 80259 0.66 0.852207
Target:  5'- gGCGGCCGcggaccuggcGGUgGCGGUGcggcgggagaACCcCCAGGc -3'
miRNA:   3'- -UGUCGGU----------CUAgCGCCAC----------UGGuGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 541 0.66 0.852207
Target:  5'- -gAGCCGGAagGCGGcGACgCGCCGc- -3'
miRNA:   3'- ugUCGGUCUagCGCCaCUG-GUGGUcc -5'
21380 5' -57.3 NC_004812.1 + 107198 0.66 0.852207
Target:  5'- gGCGGCCcGGGgccacggCGCGG--GCCGCCuGGg -3'
miRNA:   3'- -UGUCGG-UCUa------GCGCCacUGGUGGuCC- -5'
21380 5' -57.3 NC_004812.1 + 46886 0.66 0.852207
Target:  5'- cGCAGCCccagcgccccGGGgcgggCGCGGcGGCCGCCGc- -3'
miRNA:   3'- -UGUCGG----------UCUa----GCGCCaCUGGUGGUcc -5'
21380 5' -57.3 NC_004812.1 + 96855 0.66 0.852207
Target:  5'- gACGGCgGGGugaUCGUc--GGCCGCCAGGa -3'
miRNA:   3'- -UGUCGgUCU---AGCGccaCUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 80046 0.66 0.85143
Target:  5'- cACGGCCAGucccgagagcacgGUCGaGGcGGCCGuCCGGGc -3'
miRNA:   3'- -UGUCGGUC-------------UAGCgCCaCUGGU-GGUCC- -5'
21380 5' -57.3 NC_004812.1 + 67688 0.66 0.84909
Target:  5'- gGCGGCCAGGguuccgagcagggCGCGGguggcgGACUggGCgAGGa -3'
miRNA:   3'- -UGUCGGUCUa------------GCGCCa-----CUGG--UGgUCC- -5'
21380 5' -57.3 NC_004812.1 + 94414 0.67 0.84515
Target:  5'- cGCGGCCGGGgggccgaaucgguggCGCGGgcGGCCGCgGGc -3'
miRNA:   3'- -UGUCGGUCUa--------------GCGCCa-CUGGUGgUCc -5'
21380 5' -57.3 NC_004812.1 + 37395 0.67 0.844357
Target:  5'- uACAGgCaAGGgggggcCGCGGacACCACCAGGa -3'
miRNA:   3'- -UGUCgG-UCUa-----GCGCCacUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 77164 0.67 0.844357
Target:  5'- gGCAGCCcGccCGCGGcGgcgccguccccGCCGCCGGGc -3'
miRNA:   3'- -UGUCGGuCuaGCGCCaC-----------UGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 119492 0.67 0.844357
Target:  5'- cGCGGCggCAGGg-GCGGcguccgcgGGCCGCCGGGc -3'
miRNA:   3'- -UGUCG--GUCUagCGCCa-------CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 76485 0.67 0.844357
Target:  5'- gGCAcGCCGGAUCcCGGacGGCCGggcUCAGGg -3'
miRNA:   3'- -UGU-CGGUCUAGcGCCa-CUGGU---GGUCC- -5'
21380 5' -57.3 NC_004812.1 + 43871 0.67 0.844357
Target:  5'- uCGGCCAGGUCGaaccgcaGGgaGGCgGCgCAGGg -3'
miRNA:   3'- uGUCGGUCUAGCg------CCa-CUGgUG-GUCC- -5'
21380 5' -57.3 NC_004812.1 + 6494 0.67 0.844357
Target:  5'- uACAGgCaAGGgggggcCGCGGacACCACCAGGa -3'
miRNA:   3'- -UGUCgG-UCUa-----GCGCCacUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 55536 0.67 0.844357
Target:  5'- --cGCCAcgcggCGCGccucacguacGUGGCCACCGGGg -3'
miRNA:   3'- uguCGGUcua--GCGC----------CACUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 137551 0.67 0.844357
Target:  5'- -gGGCCuGGGcCGCGGUcucGGCCGCCGcGGc -3'
miRNA:   3'- ugUCGG-UCUaGCGCCA---CUGGUGGU-CC- -5'
21380 5' -57.3 NC_004812.1 + 86917 0.67 0.844357
Target:  5'- uCAGCCAGuagagCGCGGc--CC-CCAGGa -3'
miRNA:   3'- uGUCGGUCua---GCGCCacuGGuGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 75272 0.67 0.844357
Target:  5'- -gGGCCuGcgCGCcGUGAUCACCgAGGc -3'
miRNA:   3'- ugUCGGuCuaGCGcCACUGGUGG-UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.