miRNA display CGI


Results 21 - 40 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21380 5' -57.3 NC_004812.1 + 14366 0.71 0.577988
Target:  5'- cCGGCCGcgcGggCGCGGcGGCgCACCAGGu -3'
miRNA:   3'- uGUCGGU---CuaGCGCCaCUG-GUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 14622 0.66 0.852207
Target:  5'- uGCAGCCGGGgcacccgCGCGGccuccagccggUGcuCCGCCAGc -3'
miRNA:   3'- -UGUCGGUCUa------GCGCC-----------ACu-GGUGGUCc -5'
21380 5' -57.3 NC_004812.1 + 15549 0.66 0.880913
Target:  5'- cGCAGCgCGGAgagUGCGucguccuGUGGCCGCCGcuguGGa -3'
miRNA:   3'- -UGUCG-GUCUa--GCGC-------CACUGGUGGU----CC- -5'
21380 5' -57.3 NC_004812.1 + 16222 0.68 0.775425
Target:  5'- cGCGcGCCGGAg-GCGGagccGGCCgGCCAGGa -3'
miRNA:   3'- -UGU-CGGUCUagCGCCa---CUGG-UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 16758 0.68 0.790884
Target:  5'- uCAGUCGGGgggCGCGGgGGCCGgagggugagggggcCCAGGu -3'
miRNA:   3'- uGUCGGUCUa--GCGCCaCUGGU--------------GGUCC- -5'
21380 5' -57.3 NC_004812.1 + 18197 0.66 0.884363
Target:  5'- gGCAGCCccccgcguccaCGCGGUaguaGGCCACCcGGg -3'
miRNA:   3'- -UGUCGGucua-------GCGCCA----CUGGUGGuCC- -5'
21380 5' -57.3 NC_004812.1 + 18290 0.68 0.76616
Target:  5'- -gGGCCAGGcCGCGGcgggaguagGACCGCgaCAGGu -3'
miRNA:   3'- ugUCGGUCUaGCGCCa--------CUGGUG--GUCC- -5'
21380 5' -57.3 NC_004812.1 + 18999 0.67 0.811153
Target:  5'- aGCAGCCGGAggccCGCGGccgcgGGCCggcgcaGCgCGGGc -3'
miRNA:   3'- -UGUCGGUCUa---GCGCCa----CUGG------UG-GUCC- -5'
21380 5' -57.3 NC_004812.1 + 19058 0.71 0.628273
Target:  5'- gGCGGCCgAGAcCGCGGcccaGGCCcgcGCCGGGc -3'
miRNA:   3'- -UGUCGG-UCUaGCGCCa---CUGG---UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 19568 0.66 0.867319
Target:  5'- cGCGGCCGacgCGCacuggGGUGuguccuggaucGCCGCCAGGc -3'
miRNA:   3'- -UGUCGGUcuaGCG-----CCAC-----------UGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 19628 0.73 0.499765
Target:  5'- cGCGuCCGGucUCGCGGcgacgugGGCCGCCAGGg -3'
miRNA:   3'- -UGUcGGUCu-AGCGCCa------CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 19635 0.66 0.865103
Target:  5'- cCGGuCCAGG-CGCucuagcuccuguguGGUgaGACCGCCGGGg -3'
miRNA:   3'- uGUC-GGUCUaGCG--------------CCA--CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 20038 0.7 0.658534
Target:  5'- gGCGGCgAGcGUCcCGGUaGGCCAUCAGGc -3'
miRNA:   3'- -UGUCGgUC-UAGcGCCA-CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 20117 0.66 0.859863
Target:  5'- cGCAG-CGGcgCGCGGgggagcgGACCgggccccgGCCGGGa -3'
miRNA:   3'- -UGUCgGUCuaGCGCCa------CUGG--------UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 20160 0.68 0.747291
Target:  5'- --cGCgCGGAUucgccUGCGGUG-CCGCCGGGc -3'
miRNA:   3'- uguCG-GUCUA-----GCGCCACuGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 20231 0.67 0.83632
Target:  5'- aACGGCUAG--CGCGG---CCGCCGGGa -3'
miRNA:   3'- -UGUCGGUCuaGCGCCacuGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 22931 0.7 0.678619
Target:  5'- --cGUgGGGUCGCGGUGagucccucGCCGCuCGGGg -3'
miRNA:   3'- uguCGgUCUAGCGCCAC--------UGGUG-GUCC- -5'
21380 5' -57.3 NC_004812.1 + 23667 0.67 0.828101
Target:  5'- -uGGCCuucuUCGCccuGGUGAUgGCCGGGg -3'
miRNA:   3'- ugUCGGucu-AGCG---CCACUGgUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 24670 0.69 0.698554
Target:  5'- uGCAGCagCAGGUCGCGGcacggGAucCCGCgAGGc -3'
miRNA:   3'- -UGUCG--GUCUAGCGCCa----CU--GGUGgUCC- -5'
21380 5' -57.3 NC_004812.1 + 25457 0.68 0.756779
Target:  5'- gGCAGCCGugguGGUCGCGcG-GGCaCACgAGGa -3'
miRNA:   3'- -UGUCGGU----CUAGCGC-CaCUG-GUGgUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.