miRNA display CGI


Results 1 - 20 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21380 5' -57.3 NC_004812.1 + 99 0.68 0.76616
Target:  5'- -gGGCCGGGgcgcgCGCGG-GGCCGggagcccgcCCGGGa -3'
miRNA:   3'- ugUCGGUCUa----GCGCCaCUGGU---------GGUCC- -5'
21380 5' -57.3 NC_004812.1 + 541 0.66 0.852207
Target:  5'- -gAGCCGGAagGCGGcGACgCGCCGc- -3'
miRNA:   3'- ugUCGGUCUagCGCCaCUG-GUGGUcc -5'
21380 5' -57.3 NC_004812.1 + 818 0.67 0.81971
Target:  5'- cCGGCCGGGaaGCGGUGuCCgacGCCcGGa -3'
miRNA:   3'- uGUCGGUCUagCGCCACuGG---UGGuCC- -5'
21380 5' -57.3 NC_004812.1 + 2735 0.69 0.737705
Target:  5'- cGCGGCgCAGGUCGCGcGcggcgGGCCAgCGGa -3'
miRNA:   3'- -UGUCG-GUCUAGCGC-Ca----CUGGUgGUCc -5'
21380 5' -57.3 NC_004812.1 + 3891 0.7 0.668591
Target:  5'- cGCAGCCAGAggCGCGGgcgcGGCgGCgCGGcGg -3'
miRNA:   3'- -UGUCGGUCUa-GCGCCa---CUGgUG-GUC-C- -5'
21380 5' -57.3 NC_004812.1 + 3939 0.69 0.718273
Target:  5'- gGCGGCaCGGcgCGCGc-GGCCGCCAGc -3'
miRNA:   3'- -UGUCG-GUCuaGCGCcaCUGGUGGUCc -5'
21380 5' -57.3 NC_004812.1 + 5879 0.76 0.357031
Target:  5'- -gGGCCGGGgggCGCGGgcgcgggcucaggGGCCGCCGGGc -3'
miRNA:   3'- ugUCGGUCUa--GCGCCa------------CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 6292 0.68 0.76616
Target:  5'- cACGGCCAGGgggaGCGGcGcCC-CCGGGc -3'
miRNA:   3'- -UGUCGGUCUag--CGCCaCuGGuGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 6431 0.73 0.462416
Target:  5'- uACAGCCcgcccgGCGGgggGACCGCCGGGa -3'
miRNA:   3'- -UGUCGGucuag-CGCCa--CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 6494 0.67 0.844357
Target:  5'- uACAGgCaAGGgggggcCGCGGacACCACCAGGa -3'
miRNA:   3'- -UGUCgG-UCUa-----GCGCCacUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 6842 0.7 0.678619
Target:  5'- gGCGGCCc--UCGCGGUcggcgaggcGGCCcGCCGGGg -3'
miRNA:   3'- -UGUCGGucuAGCGCCA---------CUGG-UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 7624 0.68 0.784565
Target:  5'- --cGCCGGAgacgCGCGGcGGCCGgggUCGGGg -3'
miRNA:   3'- uguCGGUCUa---GCGCCaCUGGU---GGUCC- -5'
21380 5' -57.3 NC_004812.1 + 8239 0.68 0.756779
Target:  5'- gGCGGCCGGGcCGgGGguccGCCcCCGGGg -3'
miRNA:   3'- -UGUCGGUCUaGCgCCac--UGGuGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 8354 0.7 0.638367
Target:  5'- cGCGGCCGccccaccgCGuCGGcGGCCGCCGGGg -3'
miRNA:   3'- -UGUCGGUcua-----GC-GCCaCUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 11157 0.67 0.802437
Target:  5'- uCGGCCAGG-CGaauguagguCGGUG-CCAUCAGGu -3'
miRNA:   3'- uGUCGGUCUaGC---------GCCACuGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 11514 0.67 0.835506
Target:  5'- cGCAGCugCAGGUUGaCGGUGuguccguACCACCcgAGGc -3'
miRNA:   3'- -UGUCG--GUCUAGC-GCCAC-------UGGUGG--UCC- -5'
21380 5' -57.3 NC_004812.1 + 13010 0.73 0.47162
Target:  5'- cGCcGCCGGAg-GCGGccUGAUCGCCGGGg -3'
miRNA:   3'- -UGuCGGUCUagCGCC--ACUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 13128 0.66 0.881608
Target:  5'- uGCGGCuCGGGcgGUGGUG-CCGCCGGc -3'
miRNA:   3'- -UGUCG-GUCUagCGCCACuGGUGGUCc -5'
21380 5' -57.3 NC_004812.1 + 13417 0.69 0.708445
Target:  5'- gACGGCCGGA--GgGGUGGCCGucguuUCGGGg -3'
miRNA:   3'- -UGUCGGUCUagCgCCACUGGU-----GGUCC- -5'
21380 5' -57.3 NC_004812.1 + 13504 0.69 0.698554
Target:  5'- --cGCCAGG-CGCGGggcccacggcgUGACgGCCGGGu -3'
miRNA:   3'- uguCGGUCUaGCGCC-----------ACUGgUGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.