miRNA display CGI


Results 1 - 20 of 272 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21380 5' -57.3 NC_004812.1 + 156509 0.68 0.76616
Target:  5'- -gGGCCGGGgcgcgCGCGG-GGCCGggagcccgcCCGGGa -3'
miRNA:   3'- ugUCGGUCUa----GCGCCaCUGGU---------GGUCC- -5'
21380 5' -57.3 NC_004812.1 + 155930 0.75 0.376074
Target:  5'- -aGGCCGGGcCGCGG-GAgCGCCGGGg -3'
miRNA:   3'- ugUCGGUCUaGCGCCaCUgGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 155759 0.67 0.81971
Target:  5'- cGCGGCCgcGGGgacacgCGCGG-GGCCcuCCGGGc -3'
miRNA:   3'- -UGUCGG--UCUa-----GCGCCaCUGGu-GGUCC- -5'
21380 5' -57.3 NC_004812.1 + 155626 0.68 0.793572
Target:  5'- -aGGCCuagugaAGAUCGgGGgcgGGCaCGCCGGGc -3'
miRNA:   3'- ugUCGG------UCUAGCgCCa--CUG-GUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 155587 0.75 0.384209
Target:  5'- gGCGGCCGGGcccUCGCGGgggcgcGGCCccgGCCGGGc -3'
miRNA:   3'- -UGUCGGUCU---AGCGCCa-----CUGG---UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 155462 0.66 0.859863
Target:  5'- -gGGCCGGGcUCGC----GCCGCCGGGg -3'
miRNA:   3'- ugUCGGUCU-AGCGccacUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 153978 0.67 0.828101
Target:  5'- gACGGCgCAGGucUCGCGGggcggGGCCGgCGcGGa -3'
miRNA:   3'- -UGUCG-GUCU--AGCGCCa----CUGGUgGU-CC- -5'
21380 5' -57.3 NC_004812.1 + 153357 0.67 0.801557
Target:  5'- gGCGGCgGGggCGCGGgcgccccUGGCgggCGCCGGGu -3'
miRNA:   3'- -UGUCGgUCuaGCGCC-------ACUG---GUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 153186 0.66 0.881608
Target:  5'- -gGGCgCGGcggCGcCGGagGGCCGCCGGGg -3'
miRNA:   3'- ugUCG-GUCua-GC-GCCa-CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 153180 0.68 0.775425
Target:  5'- gGCGGCUGGcgC-CGcGUG-CCGCCGGGg -3'
miRNA:   3'- -UGUCGGUCuaGcGC-CACuGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 153147 0.73 0.480915
Target:  5'- gGCGGCgGGG-CGCGGgcggggGGCCACgGGGa -3'
miRNA:   3'- -UGUCGgUCUaGCGCCa-----CUGGUGgUCC- -5'
21380 5' -57.3 NC_004812.1 + 152805 0.7 0.642404
Target:  5'- cGCAgGCCGGG-CGCGGgccugaggucgggccUGAgCGCCGGGg -3'
miRNA:   3'- -UGU-CGGUCUaGCGCC---------------ACUgGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 152640 0.72 0.568017
Target:  5'- -gGGCCGGcgCGCGGcggggGGgCGCCGGGc -3'
miRNA:   3'- ugUCGGUCuaGCGCCa----CUgGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 150393 0.67 0.844357
Target:  5'- cGCGGCggCAGGg-GCGGcguccgcgGGCCGCCGGGc -3'
miRNA:   3'- -UGUCG--GUCUagCGCCa-------CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 148547 0.8 0.206355
Target:  5'- cGCGGCgGGGUCGCGGgccGGCCgggcGCCGGGg -3'
miRNA:   3'- -UGUCGgUCUAGCGCCa--CUGG----UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 148512 0.68 0.756779
Target:  5'- -gGGCCGGGggaggggggGCGGcgcgGGCCGCCGGGn -3'
miRNA:   3'- ugUCGGUCUag-------CGCCa---CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 148439 0.69 0.698554
Target:  5'- --cGUgGGGUCGCGGUGAgucccucgcCCGCuCGGGg -3'
miRNA:   3'- uguCGgUCUAGCGCCACU---------GGUG-GUCC- -5'
21380 5' -57.3 NC_004812.1 + 148195 0.66 0.873853
Target:  5'- aGCGGCCucacGGGUCgagggcuGCGGgggGGCCGCUuGGg -3'
miRNA:   3'- -UGUCGG----UCUAG-------CGCCa--CUGGUGGuCC- -5'
21380 5' -57.3 NC_004812.1 + 148109 0.73 0.490298
Target:  5'- gGCAGCCGGcUCG-GGcGGCCGCCGGc -3'
miRNA:   3'- -UGUCGGUCuAGCgCCaCUGGUGGUCc -5'
21380 5' -57.3 NC_004812.1 + 143297 1.09 0.002361
Target:  5'- aACAGCCAGAUCGCGGUGACCACCAGGc -3'
miRNA:   3'- -UGUCGGUCUAGCGCCACUGGUGGUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.