miRNA display CGI


Results 1 - 20 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21380 5' -57.3 NC_004812.1 + 143297 1.09 0.002361
Target:  5'- aACAGCCAGAUCGCGGUGACCACCAGGc -3'
miRNA:   3'- -UGUCGGUCUAGCGCCACUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 77394 0.84 0.118714
Target:  5'- gGCGGCCAGGUCgGCGGgGGCCuCCAGGu -3'
miRNA:   3'- -UGUCGGUCUAG-CGCCaCUGGuGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 49817 0.81 0.173643
Target:  5'- gGCAGCCAGcgCGUGGgGGUCACCAGGa -3'
miRNA:   3'- -UGUCGGUCuaGCGCCaCUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 148547 0.8 0.206355
Target:  5'- cGCGGCgGGGUCGCGGgccGGCCgggcGCCGGGg -3'
miRNA:   3'- -UGUCGgUCUAGCGCCa--CUGG----UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 117646 0.8 0.206355
Target:  5'- cGCGGCgGGGUCGCGGgccGGCCgggcGCCGGGg -3'
miRNA:   3'- -UGUCGgUCUAGCGCCa--CUGG----UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 46293 0.8 0.211442
Target:  5'- gGCGGCCGGAggcCGCGGcgGGCCGCgCGGGc -3'
miRNA:   3'- -UGUCGGUCUa--GCGCCa-CUGGUG-GUCC- -5'
21380 5' -57.3 NC_004812.1 + 54676 0.79 0.244265
Target:  5'- aGCGGCCGGGUCGCGGcgaggagGGCgaggGCCAGGa -3'
miRNA:   3'- -UGUCGGUCUAGCGCCa------CUGg---UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 74194 0.77 0.287784
Target:  5'- gGCAGguCCAGGUCGCuGGUGGCCucgcgcagcuCCAGGg -3'
miRNA:   3'- -UGUC--GGUCUAGCG-CCACUGGu---------GGUCC- -5'
21380 5' -57.3 NC_004812.1 + 92563 0.76 0.352377
Target:  5'- --cGCCAGAUCGaCGGUGaacuGCCGCCuGGc -3'
miRNA:   3'- uguCGGUCUAGC-GCCAC----UGGUGGuCC- -5'
21380 5' -57.3 NC_004812.1 + 5879 0.76 0.357031
Target:  5'- -gGGCCGGGgggCGCGGgcgcgggcucaggGGCCGCCGGGc -3'
miRNA:   3'- ugUCGGUCUa--GCGCCa------------CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 36780 0.76 0.357031
Target:  5'- -gGGCCGGGgggCGCGGgcgcgggcucaggGGCCGCCGGGc -3'
miRNA:   3'- ugUCGGUCUa--GCGCCa------------CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 155930 0.75 0.376074
Target:  5'- -aGGCCGGGcCGCGG-GAgCGCCGGGg -3'
miRNA:   3'- ugUCGGUCUaGCGCCaCUgGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 30422 0.75 0.376074
Target:  5'- -aGGCCGGGcCGCGG-GAgCGCCGGGg -3'
miRNA:   3'- ugUCGGUCUaGCGCCaCUgGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 155587 0.75 0.384209
Target:  5'- gGCGGCCGGGcccUCGCGGgggcgcGGCCccgGCCGGGc -3'
miRNA:   3'- -UGUCGGUCU---AGCGCCa-----CUGG---UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 30078 0.75 0.384209
Target:  5'- gGCGGCCGGGcccUCGCGGgggcgcGGCCccgGCCGGGc -3'
miRNA:   3'- -UGUCGGUCU---AGCGCCa-----CUGG---UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 120378 0.75 0.384209
Target:  5'- cGCGGCCGGGggcgcguaCGCGGgcGACCGCgAGGg -3'
miRNA:   3'- -UGUCGGUCUa-------GCGCCa-CUGGUGgUCC- -5'
21380 5' -57.3 NC_004812.1 + 38523 0.75 0.392459
Target:  5'- gACAGCCGGAgcaCGCGGUGGuCCuucccCCAGa -3'
miRNA:   3'- -UGUCGGUCUa--GCGCCACU-GGu----GGUCc -5'
21380 5' -57.3 NC_004812.1 + 107634 0.75 0.400824
Target:  5'- uGCGGCCGcGUCGCGG-GGCacguCGCCGGGg -3'
miRNA:   3'- -UGUCGGUcUAGCGCCaCUG----GUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 91536 0.74 0.41789
Target:  5'- cGCGGCCAGggCgGCGGcGGCCGCCGa- -3'
miRNA:   3'- -UGUCGGUCuaG-CGCCaCUGGUGGUcc -5'
21380 5' -57.3 NC_004812.1 + 102245 0.74 0.421356
Target:  5'- gACGGCCAGAacuacaccgaggggaUCGCGGUGAUCuuCAaGGa -3'
miRNA:   3'- -UGUCGGUCU---------------AGCGCCACUGGugGU-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.