miRNA display CGI


Results 1 - 20 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21380 5' -57.3 NC_004812.1 + 142193 0.72 0.518936
Target:  5'- -uGGCCGGcgCGgGGcUGGCCGCCGGc -3'
miRNA:   3'- ugUCGGUCuaGCgCC-ACUGGUGGUCc -5'
21380 5' -57.3 NC_004812.1 + 6431 0.73 0.462416
Target:  5'- uACAGCCcgcccgGCGGgggGACCGCCGGGa -3'
miRNA:   3'- -UGUCGGucuag-CGCCa--CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 59140 0.73 0.47162
Target:  5'- -gGGCCAGGUCcUGGUacACCGCCAGGu -3'
miRNA:   3'- ugUCGGUCUAGcGCCAc-UGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 13010 0.73 0.47162
Target:  5'- cGCcGCCGGAg-GCGGccUGAUCGCCGGGg -3'
miRNA:   3'- -UGuCGGUCUagCGCC--ACUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 52044 0.73 0.47162
Target:  5'- cACGGCCGuggcGAacaCGCGGgcaucGGCCACCGGGg -3'
miRNA:   3'- -UGUCGGU----CUa--GCGCCa----CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 30377 0.73 0.480915
Target:  5'- gGCGGCCGGGUCGgGGcucuCCuCCGGGg -3'
miRNA:   3'- -UGUCGGUCUAGCgCCacu-GGuGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 122246 0.73 0.480915
Target:  5'- gGCGGCgGGG-CGCGGgcggggGGCCACgGGGa -3'
miRNA:   3'- -UGUCGgUCUaGCGCCa-----CUGGUGgUCC- -5'
21380 5' -57.3 NC_004812.1 + 117208 0.73 0.490298
Target:  5'- gGCAGCCGGcUCG-GGcGGCCGCCGGc -3'
miRNA:   3'- -UGUCGGUCuAGCgCCaCUGGUGGUCc -5'
21380 5' -57.3 NC_004812.1 + 19628 0.73 0.499765
Target:  5'- cGCGuCCGGucUCGCGGcgacgugGGCCGCCAGGg -3'
miRNA:   3'- -UGUcGGUCu-AGCGCCa------CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 39107 0.74 0.4443
Target:  5'- gACGGCCGcGUCGCGGUGGucagguCCacgaGCCAGGc -3'
miRNA:   3'- -UGUCGGUcUAGCGCCACU------GG----UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 45422 0.74 0.4443
Target:  5'- -aAGCaGGggCGCGGUGGCCACCgucAGGu -3'
miRNA:   3'- ugUCGgUCuaGCGCCACUGGUGG---UCC- -5'
21380 5' -57.3 NC_004812.1 + 38523 0.75 0.392459
Target:  5'- gACAGCCGGAgcaCGCGGUGGuCCuucccCCAGa -3'
miRNA:   3'- -UGUCGGUCUa--GCGCCACU-GGu----GGUCc -5'
21380 5' -57.3 NC_004812.1 + 117646 0.8 0.206355
Target:  5'- cGCGGCgGGGUCGCGGgccGGCCgggcGCCGGGg -3'
miRNA:   3'- -UGUCGgUCUAGCGCCa--CUGG----UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 46293 0.8 0.211442
Target:  5'- gGCGGCCGGAggcCGCGGcgGGCCGCgCGGGc -3'
miRNA:   3'- -UGUCGGUCUa--GCGCCa-CUGGUG-GUCC- -5'
21380 5' -57.3 NC_004812.1 + 54676 0.79 0.244265
Target:  5'- aGCGGCCGGGUCGCGGcgaggagGGCgaggGCCAGGa -3'
miRNA:   3'- -UGUCGGUCUAGCGCCa------CUGg---UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 74194 0.77 0.287784
Target:  5'- gGCAGguCCAGGUCGCuGGUGGCCucgcgcagcuCCAGGg -3'
miRNA:   3'- -UGUC--GGUCUAGCG-CCACUGGu---------GGUCC- -5'
21380 5' -57.3 NC_004812.1 + 92563 0.76 0.352377
Target:  5'- --cGCCAGAUCGaCGGUGaacuGCCGCCuGGc -3'
miRNA:   3'- uguCGGUCUAGC-GCCAC----UGGUGGuCC- -5'
21380 5' -57.3 NC_004812.1 + 5879 0.76 0.357031
Target:  5'- -gGGCCGGGgggCGCGGgcgcgggcucaggGGCCGCCGGGc -3'
miRNA:   3'- ugUCGGUCUa--GCGCCa------------CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 155930 0.75 0.376074
Target:  5'- -aGGCCGGGcCGCGG-GAgCGCCGGGg -3'
miRNA:   3'- ugUCGGUCUaGCGCCaCUgGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 155587 0.75 0.384209
Target:  5'- gGCGGCCGGGcccUCGCGGgggcgcGGCCccgGCCGGGc -3'
miRNA:   3'- -UGUCGGUCU---AGCGCCa-----CUGG---UGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.