miRNA display CGI


Results 1 - 20 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21380 5' -57.3 NC_004812.1 + 143297 1.09 0.002361
Target:  5'- aACAGCCAGAUCGCGGUGACCACCAGGc -3'
miRNA:   3'- -UGUCGGUCUAGCGCCACUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 70984 0.71 0.577988
Target:  5'- aGCAccGCgGGGccCGCGGgucGGCCGCCAGGg -3'
miRNA:   3'- -UGU--CGgUCUa-GCGCCa--CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 83196 0.71 0.577988
Target:  5'- cGCGGCgGGAggCGCGGcGGCCGCgcuCGGGg -3'
miRNA:   3'- -UGUCGgUCUa-GCGCCaCUGGUG---GUCC- -5'
21380 5' -57.3 NC_004812.1 + 18197 0.66 0.884363
Target:  5'- gGCAGCCccccgcguccaCGCGGUaguaGGCCACCcGGg -3'
miRNA:   3'- -UGUCGGucua-------GCGCCA----CUGGUGGuCC- -5'
21380 5' -57.3 NC_004812.1 + 30422 0.75 0.376074
Target:  5'- -aGGCCGGGcCGCGG-GAgCGCCGGGg -3'
miRNA:   3'- ugUCGGUCUaGCGCCaCUgGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 30078 0.75 0.384209
Target:  5'- gGCGGCCGGGcccUCGCGGgggcgcGGCCccgGCCGGGc -3'
miRNA:   3'- -UGUCGGUCU---AGCGCCa-----CUGG---UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 107634 0.75 0.400824
Target:  5'- uGCGGCCGcGUCGCGG-GGCacguCGCCGGGg -3'
miRNA:   3'- -UGUCGGUcUAGCGCCaCUG----GUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 91536 0.74 0.41789
Target:  5'- cGCGGCCAGggCgGCGGcGGCCGCCGa- -3'
miRNA:   3'- -UGUCGGUCuaG-CGCCaCUGGUGGUcc -5'
21380 5' -57.3 NC_004812.1 + 142381 0.73 0.47162
Target:  5'- uCAcCCGGcgCGCcGUGGCCGCCGGGg -3'
miRNA:   3'- uGUcGGUCuaGCGcCACUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 152640 0.72 0.568017
Target:  5'- -gGGCCGGcgCGCGGcggggGGgCGCCGGGc -3'
miRNA:   3'- ugUCGGUCuaGCGCCa----CUgGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 148109 0.73 0.490298
Target:  5'- gGCAGCCGGcUCG-GGcGGCCGCCGGc -3'
miRNA:   3'- -UGUCGGUCuAGCgCCaCUGGUGGUCc -5'
21380 5' -57.3 NC_004812.1 + 37332 0.73 0.462416
Target:  5'- uACAGCCcgcccgGCGGgggGACCGCCGGGa -3'
miRNA:   3'- -UGUCGGucuag-CGCCa--CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 49817 0.81 0.173643
Target:  5'- gGCAGCCAGcgCGUGGgGGUCACCAGGa -3'
miRNA:   3'- -UGUCGGUCuaGCGCCaCUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 119012 0.72 0.518936
Target:  5'- gACuGCCGGGUgaaCGCGGgcGGCCACCGGc -3'
miRNA:   3'- -UGuCGGUCUA---GCGCCa-CUGGUGGUCc -5'
21380 5' -57.3 NC_004812.1 + 148547 0.8 0.206355
Target:  5'- cGCGGCgGGGUCGCGGgccGGCCgggcGCCGGGg -3'
miRNA:   3'- -UGUCGgUCUAGCGCCa--CUGG----UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 102245 0.74 0.421356
Target:  5'- gACGGCCAGAacuacaccgaggggaUCGCGGUGAUCuuCAaGGa -3'
miRNA:   3'- -UGUCGGUCU---------------AGCGCCACUGGugGU-CC- -5'
21380 5' -57.3 NC_004812.1 + 76373 0.72 0.568017
Target:  5'- gACcGCgGGAUCGUGGUcACCgggGCCAGGa -3'
miRNA:   3'- -UGuCGgUCUAGCGCCAcUGG---UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 14366 0.71 0.577988
Target:  5'- cCGGCCGcgcGggCGCGGcGGCgCACCAGGu -3'
miRNA:   3'- uGUCGGU---CuaGCGCCaCUG-GUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 36780 0.76 0.357031
Target:  5'- -gGGCCGGGgggCGCGGgcgcgggcucaggGGCCGCCGGGc -3'
miRNA:   3'- ugUCGGUCUa--GCGCCa------------CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 120378 0.75 0.384209
Target:  5'- cGCGGCCGGGggcgcguaCGCGGgcGACCGCgAGGg -3'
miRNA:   3'- -UGUCGGUCUa-------GCGCCa-CUGGUGgUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.