miRNA display CGI


Results 1 - 20 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21380 5' -57.3 NC_004812.1 + 84939 0.66 0.872415
Target:  5'- gGCcGCCGGGUCGa-GUGGCUgggggaggcgugggGCCGGGu -3'
miRNA:   3'- -UGuCGGUCUAGCgcCACUGG--------------UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 103767 0.66 0.874569
Target:  5'- -gGGCCGcGGUCggGCGuGUGGCCGucccCCAGGc -3'
miRNA:   3'- ugUCGGU-CUAG--CGC-CACUGGU----GGUCC- -5'
21380 5' -57.3 NC_004812.1 + 67688 0.66 0.84909
Target:  5'- gGCGGCCAGGguuccgagcagggCGCGGguggcgGACUggGCgAGGa -3'
miRNA:   3'- -UGUCGGUCUa------------GCGCCa-----CUGG--UGgUCC- -5'
21380 5' -57.3 NC_004812.1 + 72489 0.66 0.867319
Target:  5'- gGCGGCgCcucgGGGUCGgGGggcgcgccGCCGCCGGGg -3'
miRNA:   3'- -UGUCG-G----UCUAGCgCCac------UGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 81328 0.66 0.86287
Target:  5'- -gGGCCA--UCGCcucGGUGAucacggcgcgcaggcCCGCCAGGg -3'
miRNA:   3'- ugUCGGUcuAGCG---CCACU---------------GGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 74068 0.66 0.852207
Target:  5'- aGCGGCgGGcgCGCGcG-GGCCGCCucGGc -3'
miRNA:   3'- -UGUCGgUCuaGCGC-CaCUGGUGGu-CC- -5'
21380 5' -57.3 NC_004812.1 + 73050 0.66 0.874569
Target:  5'- -aGGCCGGGUCGCuGcgcagGGCCACgacgaCGGGg -3'
miRNA:   3'- ugUCGGUCUAGCGcCa----CUGGUG-----GUCC- -5'
21380 5' -57.3 NC_004812.1 + 26112 0.66 0.852207
Target:  5'- gGCAGCgCguccgGGAUCGCGaccgccGACCACCcGGg -3'
miRNA:   3'- -UGUCG-G-----UCUAGCGCca----CUGGUGGuCC- -5'
21380 5' -57.3 NC_004812.1 + 93536 0.66 0.852207
Target:  5'- aGCGGCCGGAgggggcCGUGGgGGCggaGCCAGa -3'
miRNA:   3'- -UGUCGGUCUa-----GCGCCaCUGg--UGGUCc -5'
21380 5' -57.3 NC_004812.1 + 30513 0.66 0.874569
Target:  5'- aACAGaaAGAUCGCGaaGAaggCGCCGGGg -3'
miRNA:   3'- -UGUCggUCUAGCGCcaCUg--GUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 14622 0.66 0.852207
Target:  5'- uGCAGCCGGGgcacccgCGCGGccuccagccggUGcuCCGCCAGc -3'
miRNA:   3'- -UGUCGGUCUa------GCGCC-----------ACu-GGUGGUCc -5'
21380 5' -57.3 NC_004812.1 + 50152 0.66 0.859863
Target:  5'- cGCAGCUGGAgCGCGuGcuggagacGGCCGCCAGc -3'
miRNA:   3'- -UGUCGGUCUaGCGC-Ca-------CUGGUGGUCc -5'
21380 5' -57.3 NC_004812.1 + 155462 0.66 0.859863
Target:  5'- -gGGCCGGGcUCGC----GCCGCCGGGg -3'
miRNA:   3'- ugUCGGUCU-AGCGccacUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 35581 0.66 0.867319
Target:  5'- gGCGGCgGGGgcaccCGaCGGcGACCGCCgAGGc -3'
miRNA:   3'- -UGUCGgUCUa----GC-GCCaCUGGUGG-UCC- -5'
21380 5' -57.3 NC_004812.1 + 148195 0.66 0.873853
Target:  5'- aGCGGCCucacGGGUCgagggcuGCGGgggGGCCGCUuGGg -3'
miRNA:   3'- -UGUCGG----UCUAG-------CGCCa--CUGGUGGuCC- -5'
21380 5' -57.3 NC_004812.1 + 126049 0.66 0.852207
Target:  5'- -gAGCCGGAagGCGGcGACgCGCCGc- -3'
miRNA:   3'- ugUCGGUCUagCGCCaCUG-GUGGUcc -5'
21380 5' -57.3 NC_004812.1 + 72188 0.66 0.874569
Target:  5'- uGCGGCCGGGggccccgggucgUCGCGG-GGCguCCGcGGc -3'
miRNA:   3'- -UGUCGGUCU------------AGCGCCaCUGguGGU-CC- -5'
21380 5' -57.3 NC_004812.1 + 18197 0.66 0.884363
Target:  5'- gGCAGCCccccgcguccaCGCGGUaguaGGCCACCcGGg -3'
miRNA:   3'- -UGUCGGucua-------GCGCCA----CUGGUGGuCC- -5'
21380 5' -57.3 NC_004812.1 + 60485 0.66 0.874569
Target:  5'- cCGGCCAGggCGCGGUuGAagaaCGgaCGGGg -3'
miRNA:   3'- uGUCGGUCuaGCGCCA-CUg---GUg-GUCC- -5'
21380 5' -57.3 NC_004812.1 + 19568 0.66 0.867319
Target:  5'- cGCGGCCGacgCGCacuggGGUGuguccuggaucGCCGCCAGGc -3'
miRNA:   3'- -UGUCGGUcuaGCG-----CCAC-----------UGGUGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.