miRNA display CGI


Results 41 - 60 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21380 5' -57.3 NC_004812.1 + 25706 0.68 0.774504
Target:  5'- cUAGCCgcAGGUCGUGGuUGuucaucaGCCACUGGGg -3'
miRNA:   3'- uGUCGG--UCUAGCGCC-AC-------UGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 26112 0.66 0.852207
Target:  5'- gGCAGCgCguccgGGAUCGCGaccgccGACCACCcGGg -3'
miRNA:   3'- -UGUCG-G-----UCUAGCGCca----CUGGUGGuCC- -5'
21380 5' -57.3 NC_004812.1 + 27323 0.67 0.81971
Target:  5'- -gGGCCccGAUgGcCGG-GAUCACCAGGg -3'
miRNA:   3'- ugUCGGu-CUAgC-GCCaCUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 27564 0.67 0.83632
Target:  5'- cACGGCCAGcuuguguUCGCGGaUGAgcuCCACCu-- -3'
miRNA:   3'- -UGUCGGUCu------AGCGCC-ACU---GGUGGucc -5'
21380 5' -57.3 NC_004812.1 + 27672 0.68 0.775425
Target:  5'- gGCGGCUGGcgC-CGcGUG-CCGCCGGGg -3'
miRNA:   3'- -UGUCGGUCuaGcGC-CACuGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 29953 0.66 0.859863
Target:  5'- -gGGCCGGGcUCGC----GCCGCCGGGg -3'
miRNA:   3'- ugUCGGUCU-AGCGccacUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 30078 0.75 0.384209
Target:  5'- gGCGGCCGGGcccUCGCGGgggcgcGGCCccgGCCGGGc -3'
miRNA:   3'- -UGUCGGUCU---AGCGCCa-----CUGG---UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 30117 0.68 0.793572
Target:  5'- -aGGCCuagugaAGAUCGgGGgcgGGCaCGCCGGGc -3'
miRNA:   3'- ugUCGG------UCUAGCgCCa--CUG-GUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 30165 0.67 0.828101
Target:  5'- cACAGCCGGGagcgCGCGGcgGGCUcggcgcgcGCgAGGg -3'
miRNA:   3'- -UGUCGGUCUa---GCGCCa-CUGG--------UGgUCC- -5'
21380 5' -57.3 NC_004812.1 + 30251 0.67 0.81971
Target:  5'- cGCGGCCgcGGGgacacgCGCGG-GGCCcuCCGGGc -3'
miRNA:   3'- -UGUCGG--UCUa-----GCGCCaCUGGu-GGUCC- -5'
21380 5' -57.3 NC_004812.1 + 30377 0.73 0.480915
Target:  5'- gGCGGCCGGGUCGgGGcucuCCuCCGGGg -3'
miRNA:   3'- -UGUCGGUCUAGCgCCacu-GGuGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 30422 0.75 0.376074
Target:  5'- -aGGCCGGGcCGCGG-GAgCGCCGGGg -3'
miRNA:   3'- ugUCGGUCUaGCGCCaCUgGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 30430 0.67 0.811153
Target:  5'- -aGGUCAGggCGCGGagcgagggGGCCAgCGGGu -3'
miRNA:   3'- ugUCGGUCuaGCGCCa-------CUGGUgGUCC- -5'
21380 5' -57.3 NC_004812.1 + 30513 0.66 0.874569
Target:  5'- aACAGaaAGAUCGCGaaGAaggCGCCGGGg -3'
miRNA:   3'- -UGUCggUCUAGCGCcaCUg--GUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 30965 0.67 0.83141
Target:  5'- -gGGUCAGGUacgccgcgacguugGCGGUGaacgcaaaGCCGCCGGGg -3'
miRNA:   3'- ugUCGGUCUAg-------------CGCCAC--------UGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 31000 0.68 0.76616
Target:  5'- -gGGCCGGGgcgcgCGCGG-GGCCGggagcccgcCCGGGa -3'
miRNA:   3'- ugUCGGUCUa----GCGCCaCUGGU---------GGUCC- -5'
21380 5' -57.3 NC_004812.1 + 32858 0.67 0.828101
Target:  5'- gGCGGCCAGcggCacccCGGaGGCCGCCAGa -3'
miRNA:   3'- -UGUCGGUCua-Gc---GCCaCUGGUGGUCc -5'
21380 5' -57.3 NC_004812.1 + 32998 0.69 0.737705
Target:  5'- cCGGCCGGcguUCGCGG--GCgACCGGGc -3'
miRNA:   3'- uGUCGGUCu--AGCGCCacUGgUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 34732 0.7 0.648457
Target:  5'- gGCAGCCGccGAUCGCcguccuggGGcGGCC-CCGGGg -3'
miRNA:   3'- -UGUCGGU--CUAGCG--------CCaCUGGuGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 35581 0.66 0.867319
Target:  5'- gGCGGCgGGGgcaccCGaCGGcGACCGCCgAGGc -3'
miRNA:   3'- -UGUCGgUCUa----GC-GCCaCUGGUGG-UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.