miRNA display CGI


Results 21 - 40 of 225 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21381 3' -61.5 NC_004812.1 + 15305 0.73 0.275303
Target:  5'- gGCCUCGugcccgugaugcgcAGGc--CGCGCGAGGGGGAa -3'
miRNA:   3'- gUGGAGU--------------UCCaccGCGCGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 3070 0.73 0.28999
Target:  5'- aGCCUCGccgguGGGcGGCgggacgacgGCGUGGGGGGGAg -3'
miRNA:   3'- gUGGAGU-----UCCaCCG---------CGCGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 33971 0.73 0.28999
Target:  5'- aGCCUCGccgguGGGcGGCgggacgacgGCGUGGGGGGGAg -3'
miRNA:   3'- gUGGAGU-----UCCaCCG---------CGCGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 152635 0.73 0.296565
Target:  5'- uGCC-CGGGccGGCGCGCGGcGGGGGGg -3'
miRNA:   3'- gUGGaGUUCcaCCGCGCGCU-CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 70254 0.73 0.296565
Target:  5'- cCGCCg-GGGGUGGCGgauCGCGGuGGGGGGc -3'
miRNA:   3'- -GUGGagUUCCACCGC---GCGCU-CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 13583 0.73 0.303255
Target:  5'- cCACCUUGAGGUGG-GCGUGcAGGcGGGc -3'
miRNA:   3'- -GUGGAGUUCCACCgCGCGC-UCC-CCCu -5'
21381 3' -61.5 NC_004812.1 + 119982 0.73 0.303255
Target:  5'- cCAgCUCcAGGUGGCGCGCcacgagacGGGcGGGGGc -3'
miRNA:   3'- -GUgGAGuUCCACCGCGCG--------CUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 2038 0.73 0.31006
Target:  5'- gGCCUCGgucggcggcGGGgGGCGCGgGGGaGGGGGc -3'
miRNA:   3'- gUGGAGU---------UCCaCCGCGCgCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 127547 0.73 0.31006
Target:  5'- gGCCUCGgucggcggcGGGgGGCGCGgGGGaGGGGGc -3'
miRNA:   3'- gUGGAGU---------UCCaCCGCGCgCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 121734 0.73 0.316981
Target:  5'- uGCC-CGGGccGGCGCGCGGcGGGGGGc -3'
miRNA:   3'- gUGGaGUUCcaCCGCGCGCU-CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 43883 0.73 0.316981
Target:  5'- aACCgCAGGGaGGCG-GCGcAGGGGGAg -3'
miRNA:   3'- gUGGaGUUCCaCCGCgCGC-UCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 29424 0.72 0.331171
Target:  5'- cCGCUUUcGGGaGGCGgaCGCGGGGGGGGg -3'
miRNA:   3'- -GUGGAGuUCCaCCGC--GCGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 154932 0.72 0.331171
Target:  5'- cCGCUUUcGGGaGGCGgaCGCGGGGGGGGg -3'
miRNA:   3'- -GUGGAGuUCCaCCGC--GCGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 85648 0.72 0.338439
Target:  5'- aCGCCUCGGGGcgcUGGUGC-CGGGGcGGGu -3'
miRNA:   3'- -GUGGAGUUCC---ACCGCGcGCUCC-CCCu -5'
21381 3' -61.5 NC_004812.1 + 36862 0.72 0.338439
Target:  5'- gGCC-CGGGGaGGC-CGCGGGGGGGc -3'
miRNA:   3'- gUGGaGUUCCaCCGcGCGCUCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 5961 0.72 0.338439
Target:  5'- gGCC-CGGGGaGGC-CGCGGGGGGGc -3'
miRNA:   3'- gUGGaGUUCCaCCGcGCGCUCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 102914 0.72 0.338439
Target:  5'- gCGCCUCGGGGgGGCGgcCGCGAacgagagccgcGGGGGu -3'
miRNA:   3'- -GUGGAGUUCCaCCGC--GCGCU-----------CCCCCu -5'
21381 3' -61.5 NC_004812.1 + 106579 0.72 0.345822
Target:  5'- uCGCC--AGGG-GGCcCGCGGGGGGGAg -3'
miRNA:   3'- -GUGGagUUCCaCCGcGCGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 30422 0.72 0.345822
Target:  5'- gCACgUgAAGGUcagGGCGCggaGCGAGGGGGc -3'
miRNA:   3'- -GUGgAgUUCCA---CCGCG---CGCUCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 143871 0.72 0.360932
Target:  5'- gCugUUCGGGGaGGCGUuCGAGGGGGc -3'
miRNA:   3'- -GugGAGUUCCaCCGCGcGCUCCCCCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.