miRNA display CGI


Results 1 - 20 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21381 3' -61.5 NC_004812.1 + 143038 1.08 0.001105
Target:  5'- cCACCUCAAGGUGGCGCGCGAGGGGGAg -3'
miRNA:   3'- -GUGGAGUUCCACCGCGCGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 71132 0.82 0.071447
Target:  5'- gCGCCUCGGGGguucgggGGCGCGCGAguucgucGGGGGGc -3'
miRNA:   3'- -GUGGAGUUCCa------CCGCGCGCU-------CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 18005 0.78 0.138609
Target:  5'- gCACUUCccgcAGGUGGUGCGCGcagucgaugGGGGGGAg -3'
miRNA:   3'- -GUGGAGu---UCCACCGCGCGC---------UCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 10381 0.77 0.156845
Target:  5'- aCGCCUCGGGGgucugGGCcggcgGgGUGAGGGGGAu -3'
miRNA:   3'- -GUGGAGUUCCa----CCG-----CgCGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 40497 0.77 0.164729
Target:  5'- gGCCcCGAGGgcgGGCGCGgGGGaGGGGAg -3'
miRNA:   3'- gUGGaGUUCCa--CCGCGCgCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 18444 0.77 0.177223
Target:  5'- gGCCgCGuccGGUGGCGCgGCGGGGGGGc -3'
miRNA:   3'- gUGGaGUu--CCACCGCG-CGCUCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 122531 0.76 0.181571
Target:  5'- aGCCggcggugagUCGGGGgcggGGgGCGCGGGGGGGGg -3'
miRNA:   3'- gUGG---------AGUUCCa---CCgCGCGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 153432 0.76 0.181571
Target:  5'- aGCCggcggugagUCGGGGgcggGGgGCGCGGGGGGGGg -3'
miRNA:   3'- gUGG---------AGUUCCa---CCgCGCGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 147880 0.76 0.19992
Target:  5'- gGCCgUCGAGGcguucggGGCuCGCGAGGGGGGc -3'
miRNA:   3'- gUGG-AGUUCCa------CCGcGCGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 22952 0.75 0.209687
Target:  5'- uCGCCgcucggggCGAGG-GGUGCGCGGGGGaGGGg -3'
miRNA:   3'- -GUGGa-------GUUCCaCCGCGCGCUCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 6799 0.75 0.232626
Target:  5'- uGCCUCGGGG-GGCGCGCcgggcgucuggggcuGGGuGGGGGg -3'
miRNA:   3'- gUGGAGUUCCaCCGCGCG---------------CUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 37700 0.75 0.232626
Target:  5'- uGCCUCGGGG-GGCGCGCcgggcgucuggggcuGGGuGGGGGg -3'
miRNA:   3'- gUGGAGUUCCaCCGCGCG---------------CUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 106779 0.74 0.258828
Target:  5'- gGCgUCGGGcGgGGCGCGCGGGaGGGGGc -3'
miRNA:   3'- gUGgAGUUC-CaCCGCGCGCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 148460 0.74 0.258828
Target:  5'- uCGCCcgcUCGGGGcgaggGGUGCGCGGGGGaGGGg -3'
miRNA:   3'- -GUGG---AGUUCCa----CCGCGCGCUCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 115514 0.74 0.258828
Target:  5'- uCACCUCGAGGaacgGGCGgGgaguacgGAGGGGGGg -3'
miRNA:   3'- -GUGGAGUUCCa---CCGCgCg------CUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 155858 0.74 0.264834
Target:  5'- gCGCCggGAGGcgaGGCGCGCGcggcGGGGGAg -3'
miRNA:   3'- -GUGGagUUCCa--CCGCGCGCu---CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 30350 0.74 0.264834
Target:  5'- gCGCCggGAGGcgaGGCGCGCGcggcGGGGGAg -3'
miRNA:   3'- -GUGGagUUCCa--CCGCGCGCu---CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 70851 0.74 0.269105
Target:  5'- aCGCC-CAcaggagacgcggggGGcGUGGCuGCGCGGGGGGGGc -3'
miRNA:   3'- -GUGGaGU--------------UC-CACCG-CGCGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 11906 0.74 0.270953
Target:  5'- gACCUCGgcgaugggguggGGGUGGgGCgGCGGGGcGGGGg -3'
miRNA:   3'- gUGGAGU------------UCCACCgCG-CGCUCC-CCCU- -5'
21381 3' -61.5 NC_004812.1 + 80345 0.74 0.273432
Target:  5'- gCGCCgUCGAGGcggcgcgcgcgggccUGGcCGCcuGCGAGGGGGAg -3'
miRNA:   3'- -GUGG-AGUUCC---------------ACC-GCG--CGCUCCCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.