miRNA display CGI


Results 1 - 20 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21381 3' -61.5 NC_004812.1 + 47822 0.71 0.376497
Target:  5'- uCACCgguuucccgCAAGGgcGGUGgGgGAGGGGGAg -3'
miRNA:   3'- -GUGGa--------GUUCCa-CCGCgCgCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 127547 0.73 0.31006
Target:  5'- gGCCUCGgucggcggcGGGgGGCGCGgGGGaGGGGGc -3'
miRNA:   3'- gUGGAGU---------UCCaCCGCGCgCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 43883 0.73 0.316981
Target:  5'- aACCgCAGGGaGGCG-GCGcAGGGGGAg -3'
miRNA:   3'- gUGGaGUUCCaCCGCgCGC-UCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 121734 0.73 0.316981
Target:  5'- uGCC-CGGGccGGCGCGCGGcGGGGGGc -3'
miRNA:   3'- gUGGaGUUCcaCCGCGCGCU-CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 154932 0.72 0.331171
Target:  5'- cCGCUUUcGGGaGGCGgaCGCGGGGGGGGg -3'
miRNA:   3'- -GUGGAGuUCCaCCGC--GCGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 102914 0.72 0.338439
Target:  5'- gCGCCUCGGGGgGGCGgcCGCGAacgagagccgcGGGGGu -3'
miRNA:   3'- -GUGGAGUUCCaCCGC--GCGCU-----------CCCCCu -5'
21381 3' -61.5 NC_004812.1 + 5961 0.72 0.338439
Target:  5'- gGCC-CGGGGaGGC-CGCGGGGGGGc -3'
miRNA:   3'- gUGGaGUUCCaCCGcGCGCUCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 30422 0.72 0.345822
Target:  5'- gCACgUgAAGGUcagGGCGCggaGCGAGGGGGc -3'
miRNA:   3'- -GUGgAgUUCCA---CCGCG---CGCUCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 7935 0.71 0.368658
Target:  5'- gCGCCggcgcggcCGGGG-GGCGCGUccGGGGGGGGc -3'
miRNA:   3'- -GUGGa-------GUUCCaCCGCGCG--CUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 13583 0.73 0.303255
Target:  5'- cCACCUUGAGGUGG-GCGUGcAGGcGGGc -3'
miRNA:   3'- -GUGGAGUUCCACCgCGCGC-UCC-CCCu -5'
21381 3' -61.5 NC_004812.1 + 3070 0.73 0.28999
Target:  5'- aGCCUCGccgguGGGcGGCgggacgacgGCGUGGGGGGGAg -3'
miRNA:   3'- gUGGAGU-----UCCaCCG---------CGCGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 15305 0.73 0.275303
Target:  5'- gGCCUCGugcccgugaugcgcAGGc--CGCGCGAGGGGGAa -3'
miRNA:   3'- gUGGAGU--------------UCCaccGCGCGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 18005 0.78 0.138609
Target:  5'- gCACUUCccgcAGGUGGUGCGCGcagucgaugGGGGGGAg -3'
miRNA:   3'- -GUGGAGu---UCCACCGCGCGC---------UCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 122531 0.76 0.181571
Target:  5'- aGCCggcggugagUCGGGGgcggGGgGCGCGGGGGGGGg -3'
miRNA:   3'- gUGG---------AGUUCCa---CCgCGCGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 147880 0.76 0.19992
Target:  5'- gGCCgUCGAGGcguucggGGCuCGCGAGGGGGGc -3'
miRNA:   3'- gUGG-AGUUCCa------CCGcGCGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 6799 0.75 0.232626
Target:  5'- uGCCUCGGGG-GGCGCGCcgggcgucuggggcuGGGuGGGGGg -3'
miRNA:   3'- gUGGAGUUCCaCCGCGCG---------------CUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 115514 0.74 0.258828
Target:  5'- uCACCUCGAGGaacgGGCGgGgaguacgGAGGGGGGg -3'
miRNA:   3'- -GUGGAGUUCCa---CCGCgCg------CUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 148460 0.74 0.258828
Target:  5'- uCGCCcgcUCGGGGcgaggGGUGCGCGGGGGaGGGg -3'
miRNA:   3'- -GUGG---AGUUCCa----CCGCGCGCUCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 155858 0.74 0.264834
Target:  5'- gCGCCggGAGGcgaGGCGCGCGcggcGGGGGAg -3'
miRNA:   3'- -GUGGagUUCCa--CCGCGCGCu---CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 70851 0.74 0.269105
Target:  5'- aCGCC-CAcaggagacgcggggGGcGUGGCuGCGCGGGGGGGGc -3'
miRNA:   3'- -GUGGaGU--------------UC-CACCG-CGCGCUCCCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.