miRNA display CGI


Results 1 - 20 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21381 3' -61.5 NC_004812.1 + 27639 0.66 0.691209
Target:  5'- gAUCUcCAGGGUGGUGUaGUGcAGGGcGGGg -3'
miRNA:   3'- gUGGA-GUUCCACCGCG-CGC-UCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 95854 0.66 0.700911
Target:  5'- aACCggacCGAGGcgcgGGUGCGgugggcCGAGGGGGc -3'
miRNA:   3'- gUGGa---GUUCCa---CCGCGC------GCUCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 76168 0.66 0.700911
Target:  5'- -cCCUCuugcgggcggcuGGGGUGgGCG-GCGGGGaGGGAa -3'
miRNA:   3'- guGGAG------------UUCCAC-CGCgCGCUCC-CCCU- -5'
21381 3' -61.5 NC_004812.1 + 84000 0.66 0.64119
Target:  5'- -uCCUUggGG-GGCGuCGCGGcccggcccuccuuGGGGGGc -3'
miRNA:   3'- guGGAGuuCCaCCGC-GCGCU-------------CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 137967 0.66 0.681463
Target:  5'- gGCCccucgUCGGGGcGGgGuCGgGGGGGGGGg -3'
miRNA:   3'- gUGG-----AGUUCCaCCgC-GCgCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 117595 0.66 0.691209
Target:  5'- gGCUuuUCGGGGUuccgGGcCGgGgGAGGGGGGg -3'
miRNA:   3'- gUGG--AGUUCCA----CC-GCgCgCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 101927 0.66 0.652027
Target:  5'- gGCCUCGGGGccccGGaCGCGCGGcgcGGGcGGc -3'
miRNA:   3'- gUGGAGUUCCa---CC-GCGCGCU---CCC-CCu -5'
21381 3' -61.5 NC_004812.1 + 147693 0.66 0.699943
Target:  5'- aACCUCAucaacccGGG-GGUcgugugGCGCGGGGGGc- -3'
miRNA:   3'- gUGGAGU-------UCCaCCG------CGCGCUCCCCcu -5'
21381 3' -61.5 NC_004812.1 + 27787 0.66 0.691209
Target:  5'- aGCCcgcCGGGGgagagGGCGgGgcCGGGGGGGGa -3'
miRNA:   3'- gUGGa--GUUCCa----CCGCgC--GCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 156494 0.66 0.652027
Target:  5'- gCACUcgCGAGGgacgggccggGGCGCGCGcGGGGc- -3'
miRNA:   3'- -GUGGa-GUUCCa---------CCGCGCGCuCCCCcu -5'
21381 3' -61.5 NC_004812.1 + 84 0.66 0.652027
Target:  5'- gCACUcgCGAGGgacgggccggGGCGCGCGcGGGGc- -3'
miRNA:   3'- -GUGGa-GUUCCa---------CCGCGCGCuCCCCcu -5'
21381 3' -61.5 NC_004812.1 + 151917 0.66 0.681463
Target:  5'- cCGCC-CGGGGcucuggGGCGCGCcgGAGGuGGAc -3'
miRNA:   3'- -GUGGaGUUCCa-----CCGCGCG--CUCCcCCU- -5'
21381 3' -61.5 NC_004812.1 + 41011 0.66 0.691209
Target:  5'- -cCCUCAGGGUuucccaccgGGuCGcCGUGGGGGuGGGg -3'
miRNA:   3'- guGGAGUUCCA---------CC-GC-GCGCUCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 103256 0.66 0.642176
Target:  5'- gAUCUCGcGcaGGCGCGCGGGGGcGAc -3'
miRNA:   3'- gUGGAGUuCcaCCGCGCGCUCCCcCU- -5'
21381 3' -61.5 NC_004812.1 + 93539 0.66 0.700911
Target:  5'- gGCCggAGGG-GGC-CGUGGGGGcGGAg -3'
miRNA:   3'- gUGGagUUCCaCCGcGCGCUCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 122414 0.66 0.642176
Target:  5'- -uCCUC-GGGUGGaCGCGCGGuGGGcccGGGc -3'
miRNA:   3'- guGGAGuUCCACC-GCGCGCU-CCC---CCU- -5'
21381 3' -61.5 NC_004812.1 + 104149 0.66 0.700911
Target:  5'- uGCCgguaggCGgcAGGaGGCGaCGCGGGcGGGGGg -3'
miRNA:   3'- gUGGa-----GU--UCCaCCGC-GCGCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 115335 0.66 0.691209
Target:  5'- gCGCCUCGcuGUagcucgGGaGCGCGGGcGGGGAc -3'
miRNA:   3'- -GUGGAGUucCA------CCgCGCGCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 154693 0.66 0.646117
Target:  5'- uGCuCUCGagaAGGUGGCGUGCGguGcacgugugguuuauuGGGGGGc -3'
miRNA:   3'- gUG-GAGU---UCCACCGCGCGC--U---------------CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 122276 0.66 0.675596
Target:  5'- gACCaCGGGG-GGCGCgGCGGcgccggagggccgccGGGGGGa -3'
miRNA:   3'- gUGGaGUUCCaCCGCG-CGCU---------------CCCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.