miRNA display CGI


Results 1 - 20 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21381 3' -61.5 NC_004812.1 + 84 0.66 0.652027
Target:  5'- gCACUcgCGAGGgacgggccggGGCGCGCGcGGGGc- -3'
miRNA:   3'- -GUGGa-GUUCCa---------CCGCGCGCuCCCCcu -5'
21381 3' -61.5 NC_004812.1 + 243 0.67 0.602768
Target:  5'- gGCC-CAAGGcucccGCGCGgGAGGaGGGGg -3'
miRNA:   3'- gUGGaGUUCCac---CGCGCgCUCC-CCCU- -5'
21381 3' -61.5 NC_004812.1 + 2038 0.73 0.31006
Target:  5'- gGCCUCGgucggcggcGGGgGGCGCGgGGGaGGGGGc -3'
miRNA:   3'- gUGGAGU---------UCCaCCGCGCgCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 3070 0.73 0.28999
Target:  5'- aGCCUCGccgguGGGcGGCgggacgacgGCGUGGGGGGGAg -3'
miRNA:   3'- gUGGAGU-----UCCaCCG---------CGCGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 4626 0.67 0.601785
Target:  5'- -cCCUUAGGGgcgGGggggcgggacgccCGCGCGGGGaGGGGc -3'
miRNA:   3'- guGGAGUUCCa--CC-------------GCGCGCUCC-CCCU- -5'
21381 3' -61.5 NC_004812.1 + 5035 0.67 0.622458
Target:  5'- gACCcCGggccGGG-GGCGCGCGAGGGc-- -3'
miRNA:   3'- gUGGaGU----UCCaCCGCGCGCUCCCccu -5'
21381 3' -61.5 NC_004812.1 + 5629 0.69 0.487023
Target:  5'- gCGgCUCGGGGgccgGGCccggggucgccggGCGCGAGGGGa- -3'
miRNA:   3'- -GUgGAGUUCCa---CCG-------------CGCGCUCCCCcu -5'
21381 3' -61.5 NC_004812.1 + 5961 0.72 0.338439
Target:  5'- gGCC-CGGGGaGGC-CGCGGGGGGGc -3'
miRNA:   3'- gUGGaGUUCCaCCGcGCGCUCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 6130 0.67 0.602768
Target:  5'- gCugC-CGGGGaaGGCGgGCGAGGGGa- -3'
miRNA:   3'- -GugGaGUUCCa-CCGCgCGCUCCCCcu -5'
21381 3' -61.5 NC_004812.1 + 6519 0.68 0.563679
Target:  5'- cCACCaggagCAGGGgggGGCGgGgggcCGAGGGGGc -3'
miRNA:   3'- -GUGGa----GUUCCa--CCGCgC----GCUCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 6687 0.7 0.460766
Target:  5'- gACgaCAGGG-GGCGUGUguguuGGGGGGGAg -3'
miRNA:   3'- gUGgaGUUCCaCCGCGCG-----CUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 6799 0.75 0.232626
Target:  5'- uGCCUCGGGG-GGCGCGCcgggcgucuggggcuGGGuGGGGGg -3'
miRNA:   3'- gUGGAGUUCCaCCGCGCG---------------CUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 7544 0.69 0.506471
Target:  5'- cCGCC-CAcucGGG-GGCGgGCGcGGGGGGc -3'
miRNA:   3'- -GUGGaGU---UCCaCCGCgCGCuCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 7675 0.7 0.417337
Target:  5'- gGCCgggagCGGGGgugGGCGgGCGcGGGGGu -3'
miRNA:   3'- gUGGa----GUUCCa--CCGCgCGCuCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 7935 0.71 0.368658
Target:  5'- gCGCCggcgcggcCGGGG-GGCGCGUccGGGGGGGGc -3'
miRNA:   3'- -GUGGa-------GUUCCaCCGCGCG--CUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 7993 0.7 0.434412
Target:  5'- gCGCCggUCAGGGgGGCGCucccGCGAccccGGGGGGc -3'
miRNA:   3'- -GUGG--AGUUCCaCCGCG----CGCU----CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 8386 0.7 0.451886
Target:  5'- gGCC-CGGGGUccgGGgGCGCGGcGGGGGc -3'
miRNA:   3'- gUGGaGUUCCA---CCgCGCGCU-CCCCCu -5'
21381 3' -61.5 NC_004812.1 + 10134 0.67 0.606701
Target:  5'- aGCa--AAGGUGGCagggagcgacagacgGCGaCGGGGGGGGg -3'
miRNA:   3'- gUGgagUUCCACCG---------------CGC-GCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 10381 0.77 0.156845
Target:  5'- aCGCCUCGGGGgucugGGCcggcgGgGUGAGGGGGAu -3'
miRNA:   3'- -GUGGAGUUCCa----CCG-----CgCGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 10471 0.71 0.384447
Target:  5'- uGCC---GGGUGGgGacCGCGGGGGGGAg -3'
miRNA:   3'- gUGGaguUCCACCgC--GCGCUCCCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.