miRNA display CGI


Results 1 - 20 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21381 3' -61.5 NC_004812.1 + 156494 0.66 0.652027
Target:  5'- gCACUcgCGAGGgacgggccggGGCGCGCGcGGGGc- -3'
miRNA:   3'- -GUGGa-GUUCCa---------CCGCGCGCuCCCCcu -5'
21381 3' -61.5 NC_004812.1 + 156197 0.67 0.592949
Target:  5'- gCGCCgcgCGcggaAGGccuGCGCGCGuGGGGGGc -3'
miRNA:   3'- -GUGGa--GU----UCCac-CGCGCGCuCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 155981 0.69 0.473351
Target:  5'- aGCCUCGGGGuugcagcccgcgugcUcgcGGCGCGgGGGaGGGGAc -3'
miRNA:   3'- gUGGAGUUCC---------------A---CCGCGCgCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 155858 0.74 0.264834
Target:  5'- gCGCCggGAGGcgaGGCGCGCGcggcGGGGGAg -3'
miRNA:   3'- -GUGGagUUCCa--CCGCGCGCu---CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 155685 0.67 0.583158
Target:  5'- gCGCCggcGGGcucGGCGCGCGcgagggcguGGGGGAg -3'
miRNA:   3'- -GUGGaguUCCa--CCGCGCGCu--------CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 155542 0.68 0.554003
Target:  5'- -cCCagGAGGgcgggaggGGCGgGgGAGGGGGGa -3'
miRNA:   3'- guGGagUUCCa-------CCGCgCgCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 155221 0.69 0.515848
Target:  5'- gGCCgCGaagagcGGGccuUGGUGCGCGAGGGcGGGc -3'
miRNA:   3'- gUGGaGU------UCC---ACCGCGCGCUCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 155047 0.67 0.632317
Target:  5'- nACC-CGGGcGgcucGCGCGCGuAGGGGGGa -3'
miRNA:   3'- gUGGaGUUC-Cac--CGCGCGC-UCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 155017 0.69 0.469737
Target:  5'- gCGCCcgGAGGcgGGgagcCGUGCGGGGGGGAc -3'
miRNA:   3'- -GUGGagUUCCa-CC----GCGCGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 154932 0.72 0.331171
Target:  5'- cCGCUUUcGGGaGGCGgaCGCGGGGGGGGg -3'
miRNA:   3'- -GUGGAGuUCCaCCGC--GCGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 154693 0.66 0.646117
Target:  5'- uGCuCUCGagaAGGUGGCGUGCGguGcacgugugguuuauuGGGGGGc -3'
miRNA:   3'- gUG-GAGU---UCCACCGCGCGC--U---------------CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 154172 0.67 0.618516
Target:  5'- gCGCCuaUCGGGGaugagaaaccgcaGGgGgGCGGGGGGGAc -3'
miRNA:   3'- -GUGG--AGUUCCa------------CCgCgCGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 153432 0.76 0.181571
Target:  5'- aGCCggcggugagUCGGGGgcggGGgGCGCGGGGGGGGg -3'
miRNA:   3'- gUGG---------AGUUCCa---CCgCGCGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 153315 0.66 0.642176
Target:  5'- -uCCUC-GGGUGGaCGCGCGGuGGGcccGGGc -3'
miRNA:   3'- guGGAGuUCCACC-GCGCGCU-CCC---CCU- -5'
21381 3' -61.5 NC_004812.1 + 153177 0.66 0.675596
Target:  5'- gACCaCGGGG-GGCGCgGCGGcgccggagggccgccGGGGGGa -3'
miRNA:   3'- gUGGaGUUCCaCCGCG-CGCU---------------CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 153143 0.67 0.622458
Target:  5'- --gCUCGGcGGcGGgGCGCGGGcGGGGGg -3'
miRNA:   3'- gugGAGUU-CCaCCgCGCGCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 153119 0.69 0.506471
Target:  5'- cCGCC-CcGGG-GGCGgGCGcGGGGGGc -3'
miRNA:   3'- -GUGGaGuUCCaCCGCgCGCuCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 152820 0.69 0.478797
Target:  5'- gGCCU-GAGGUcgGGCcugaGCGcCGGGGGGGAc -3'
miRNA:   3'- gUGGAgUUCCA--CCG----CGC-GCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 152635 0.73 0.296565
Target:  5'- uGCC-CGGGccGGCGCGCGGcGGGGGGg -3'
miRNA:   3'- gUGGaGUUCcaCCGCGCGCU-CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 151917 0.66 0.681463
Target:  5'- cCGCC-CGGGGcucuggGGCGCGCcgGAGGuGGAc -3'
miRNA:   3'- -GUGGaGUUCCa-----CCGCGCG--CUCCcCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.