miRNA display CGI


Results 41 - 60 of 414 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 3' -58 NC_004812.1 + 20163 0.66 0.77454
Target:  5'- -aUCgGCGGCGcucgggccccgACCcggGCGaGCGGGCGCGu -3'
miRNA:   3'- aaAG-CGCCGU-----------UGG---UGCaCGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 56074 0.66 0.77454
Target:  5'- gUUCGaCGGCGgccucGCCGCGcccgacGUGGGCGCc -3'
miRNA:   3'- aAAGC-GCCGU-----UGGUGCa-----CGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 117645 0.66 0.802025
Target:  5'- --gCGCGGCGGggUCGCGggccgGcCGGGCGCc -3'
miRNA:   3'- aaaGCGCCGUU--GGUGCa----C-GUCCGCGu -5'
21382 3' -58 NC_004812.1 + 107831 0.66 0.81959
Target:  5'- gUUCGCGaGguAgCGgG-GCAGGCGCu -3'
miRNA:   3'- aAAGCGC-CguUgGUgCaCGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 95674 0.66 0.802025
Target:  5'- -gUCGgcgcuguaCGGCAGCCGCGUGgucauUGGGUGCc -3'
miRNA:   3'- aaAGC--------GCCGUUGGUGCAC-----GUCCGCGu -5'
21382 3' -58 NC_004812.1 + 1419 0.66 0.77454
Target:  5'- --cCGaCGGCGGCCGCGgGgAGGgGCc -3'
miRNA:   3'- aaaGC-GCCGUUGGUGCaCgUCCgCGu -5'
21382 3' -58 NC_004812.1 + 19699 0.66 0.81959
Target:  5'- --gCGCGGCGGCgCGCG-GCGccGGCGa- -3'
miRNA:   3'- aaaGCGCCGUUG-GUGCaCGU--CCGCgu -5'
21382 3' -58 NC_004812.1 + 72541 0.66 0.782917
Target:  5'- --cCGCGGCGaacgggaACCGCGccucggGgGGGCGCc -3'
miRNA:   3'- aaaGCGCCGU-------UGGUGCa-----CgUCCGCGu -5'
21382 3' -58 NC_004812.1 + 39225 0.66 0.793006
Target:  5'- --gCGUGGCccgGGCCACGcgcgugGcCAGGCGCc -3'
miRNA:   3'- aaaGCGCCG---UUGGUGCa-----C-GUCCGCGu -5'
21382 3' -58 NC_004812.1 + 115481 0.66 0.793006
Target:  5'- --gCGCGuGCGGCCGCGc-CGGGCgGCGg -3'
miRNA:   3'- aaaGCGC-CGUUGGUGCacGUCCG-CGU- -5'
21382 3' -58 NC_004812.1 + 47038 0.66 0.783841
Target:  5'- --aCG-GGCAGCgggguuUGCGUGCGGGCGUc -3'
miRNA:   3'- aaaGCgCCGUUG------GUGCACGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 41218 0.66 0.783841
Target:  5'- ---gGCGGCGACUACGcgcUGCGGuCGCc -3'
miRNA:   3'- aaagCGCCGUUGGUGC---ACGUCcGCGu -5'
21382 3' -58 NC_004812.1 + 103241 0.66 0.802025
Target:  5'- -cUCGCGGacguaguuGAUCuCGcGCAGGCGCGc -3'
miRNA:   3'- aaAGCGCCg-------UUGGuGCaCGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 29599 0.66 0.783841
Target:  5'- --gCGCGGCGG-CGCGggccgGCcGGCGCu -3'
miRNA:   3'- aaaGCGCCGUUgGUGCa----CGuCCGCGu -5'
21382 3' -58 NC_004812.1 + 43682 0.66 0.810889
Target:  5'- ---aGCGGCu-CCGCGUugugggucggGCcGGCGCAg -3'
miRNA:   3'- aaagCGCCGuuGGUGCA----------CGuCCGCGU- -5'
21382 3' -58 NC_004812.1 + 129676 0.66 0.81959
Target:  5'- --gCGCGGCGAUgACGcccGC-GGCGCc -3'
miRNA:   3'- aaaGCGCCGUUGgUGCa--CGuCCGCGu -5'
21382 3' -58 NC_004812.1 + 67679 0.66 0.802025
Target:  5'- -cUCGCcaccGGCGGCCAgGguuccgaGCAgGGCGCGg -3'
miRNA:   3'- aaAGCG----CCGUUGGUgCa------CGU-CCGCGU- -5'
21382 3' -58 NC_004812.1 + 27621 0.66 0.77454
Target:  5'- --cCGCGGCccGCCGCGcUGaC-GGCGCGa -3'
miRNA:   3'- aaaGCGCCGu-UGGUGC-AC-GuCCGCGU- -5'
21382 3' -58 NC_004812.1 + 148267 0.66 0.77454
Target:  5'- --gUGgGGCGGCCGCGcccgGCAG-CGCGg -3'
miRNA:   3'- aaaGCgCCGUUGGUGCa---CGUCcGCGU- -5'
21382 3' -58 NC_004812.1 + 134815 0.66 0.802025
Target:  5'- --cCGuCGGguACCGCG-GCGaauGGCGCGc -3'
miRNA:   3'- aaaGC-GCCguUGGUGCaCGU---CCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.