Results 21 - 40 of 414 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21382 | 3' | -58 | NC_004812.1 | + | 129774 | 0.66 | 0.810009 |
Target: 5'- --cCGCGGCGGCguucucgCGCGccaGCAGGgGCGc -3' miRNA: 3'- aaaGCGCCGUUG-------GUGCa--CGUCCgCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 126927 | 0.66 | 0.77454 |
Target: 5'- --cCGaCGGCGGCCGCGgGgAGGgGCc -3' miRNA: 3'- aaaGC-GCCGUUGGUGCaCgUCCgCGu -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 130306 | 0.66 | 0.77454 |
Target: 5'- -gUCGCGGUAGCgGgCGUagaAGGCGCc -3' miRNA: 3'- aaAGCGCCGUUGgU-GCAcg-UCCGCGu -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 94697 | 0.66 | 0.802025 |
Target: 5'- --gCGCGGCGG-CGCGUGC-GGCccgaGCAc -3' miRNA: 3'- aaaGCGCCGUUgGUGCACGuCCG----CGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 115481 | 0.66 | 0.793006 |
Target: 5'- --gCGCGuGCGGCCGCGc-CGGGCgGCGg -3' miRNA: 3'- aaaGCGC-CGUUGGUGCacGUCCG-CGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 107831 | 0.66 | 0.81959 |
Target: 5'- gUUCGCGaGguAgCGgG-GCAGGCGCu -3' miRNA: 3'- aAAGCGC-CguUgGUgCaCGUCCGCGu -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 56281 | 0.66 | 0.810889 |
Target: 5'- --cCGCGGCGgcccgcucgaggGCCugGUccagcacgcGCAGcGCGCGc -3' miRNA: 3'- aaaGCGCCGU------------UGGugCA---------CGUC-CGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 49980 | 0.66 | 0.802025 |
Target: 5'- ---aGCGGCGACUcCGgugaGCuGGCGCu -3' miRNA: 3'- aaagCGCCGUUGGuGCa---CGuCCGCGu -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 74951 | 0.66 | 0.783841 |
Target: 5'- -gUCGC-GC-GCCGCGgucaGCGGGUGCGc -3' miRNA: 3'- aaAGCGcCGuUGGUGCa---CGUCCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 39225 | 0.66 | 0.793006 |
Target: 5'- --gCGUGGCccgGGCCACGcgcgugGcCAGGCGCc -3' miRNA: 3'- aaaGCGCCG---UUGGUGCa-----C-GUCCGCGu -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 122269 | 0.66 | 0.802025 |
Target: 5'- --cCaCGGgGACCACG-GgGGGCGCGg -3' miRNA: 3'- aaaGcGCCgUUGGUGCaCgUCCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 134815 | 0.66 | 0.802025 |
Target: 5'- --cCGuCGGguACCGCG-GCGaauGGCGCGc -3' miRNA: 3'- aaaGC-GCCguUGGUGCaCGU---CCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 117645 | 0.66 | 0.802025 |
Target: 5'- --gCGCGGCGGggUCGCGggccgGcCGGGCGCc -3' miRNA: 3'- aaaGCGCCGUU--GGUGCa----C-GUCCGCGu -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 20075 | 0.66 | 0.810889 |
Target: 5'- -cUCgGCGGCAGCCAggcCGUGUacaGGGUGa- -3' miRNA: 3'- aaAG-CGCCGUUGGU---GCACG---UCCGCgu -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 147857 | 0.66 | 0.783841 |
Target: 5'- -cUCGCGGCuGCCugGgggGUcggggccgucgAGGCGUu -3' miRNA: 3'- aaAGCGCCGuUGGugCa--CG-----------UCCGCGu -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 73548 | 0.66 | 0.802025 |
Target: 5'- --cCGCaGCGACCGCGgGCAGcaCGCGg -3' miRNA: 3'- aaaGCGcCGUUGGUGCaCGUCc-GCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 20316 | 0.66 | 0.802025 |
Target: 5'- --gCGCGcGCAggcACCGCccccacGCGGGCGCGc -3' miRNA: 3'- aaaGCGC-CGU---UGGUGca----CGUCCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 103241 | 0.66 | 0.802025 |
Target: 5'- -cUCGCGGacguaguuGAUCuCGcGCAGGCGCGc -3' miRNA: 3'- aaAGCGCCg-------UUGGuGCaCGUCCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 128221 | 0.66 | 0.793006 |
Target: 5'- --aCGCGGCcggaGGCCagcACG-GCGcGGCGCAg -3' miRNA: 3'- aaaGCGCCG----UUGG---UGCaCGU-CCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 117366 | 0.66 | 0.77454 |
Target: 5'- --gUGgGGCGGCCGCGcccgGCAG-CGCGg -3' miRNA: 3'- aaaGCgCCGUUGGUGCa---CGUCcGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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