miRNA display CGI


Results 21 - 40 of 414 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 3' -58 NC_004812.1 + 3831 0.69 0.64534
Target:  5'- --aCGCGGagguCCcCGcGCAGGCGCAu -3'
miRNA:   3'- aaaGCGCCguu-GGuGCaCGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 3867 0.69 0.64534
Target:  5'- --cCGCGGCcGCCGCGgcccGCAaGCGCc -3'
miRNA:   3'- aaaGCGCCGuUGGUGCa---CGUcCGCGu -5'
21382 3' -58 NC_004812.1 + 3887 0.69 0.64534
Target:  5'- -cUCGC-GCAGCCAgaGgcGCGGGCGCGg -3'
miRNA:   3'- aaAGCGcCGUUGGUg-Ca-CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 3916 0.69 0.604327
Target:  5'- --gCGCGGCGgcgggGCCGCGcggcggcgGCAcGGCGCGc -3'
miRNA:   3'- aaaGCGCCGU-----UGGUGCa-------CGU-CCGCGU- -5'
21382 3' -58 NC_004812.1 + 4167 0.66 0.81959
Target:  5'- --gCGCGGCGAUgACGcccGC-GGCGCc -3'
miRNA:   3'- aaaGCGCCGUUGgUGCa--CGuCCGCGu -5'
21382 3' -58 NC_004812.1 + 4207 0.66 0.81959
Target:  5'- ---gGCGGgGACCGCG-GC-GGCGUc -3'
miRNA:   3'- aaagCGCCgUUGGUGCaCGuCCGCGu -5'
21382 3' -58 NC_004812.1 + 4237 0.68 0.68618
Target:  5'- ---gGCGGCGGCgGCGgcgGCGgcGGCGCc -3'
miRNA:   3'- aaagCGCCGUUGgUGCa--CGU--CCGCGu -5'
21382 3' -58 NC_004812.1 + 4266 0.66 0.810009
Target:  5'- --cCGCGGCGGCguucucgCGCGccaGCAGGgGCGc -3'
miRNA:   3'- aaaGCGCCGUUG-------GUGCa--CGUCCgCGU- -5'
21382 3' -58 NC_004812.1 + 4354 0.68 0.655586
Target:  5'- -cUCGUGG-GGCgCGCGUGCAacauGGCGCGc -3'
miRNA:   3'- aaAGCGCCgUUG-GUGCACGU----CCGCGU- -5'
21382 3' -58 NC_004812.1 + 4369 0.67 0.76511
Target:  5'- ---gGCGGCGGCgGCGUGCgccAGGCc-- -3'
miRNA:   3'- aaagCGCCGUUGgUGCACG---UCCGcgu -5'
21382 3' -58 NC_004812.1 + 4564 0.74 0.369777
Target:  5'- -cUCGCGGuCGGgCGCGaagaGCAGGCGCGu -3'
miRNA:   3'- aaAGCGCC-GUUgGUGCa---CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 4652 0.67 0.755562
Target:  5'- --gCGcCGGCGGCCuCGUaGCGccGGCGCGc -3'
miRNA:   3'- aaaGC-GCCGUUGGuGCA-CGU--CCGCGU- -5'
21382 3' -58 NC_004812.1 + 4794 0.73 0.411848
Target:  5'- --gCGgGGCGAgggCugGUGCGGGCGCGg -3'
miRNA:   3'- aaaGCgCCGUUg--GugCACGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 4798 0.66 0.77454
Target:  5'- -gUCGCGGUAGCgGgCGUagaAGGCGCc -3'
miRNA:   3'- aaAGCGCCGUUGgU-GCAcg-UCCGCGu -5'
21382 3' -58 NC_004812.1 + 4888 0.69 0.604327
Target:  5'- -gUCGCGccCGGCCACG-GCGGcGCGCGc -3'
miRNA:   3'- aaAGCGCc-GUUGGUGCaCGUC-CGCGU- -5'
21382 3' -58 NC_004812.1 + 4924 0.66 0.81959
Target:  5'- -cUCGCuGCGGcCCGCGgagGC-GGCGCu -3'
miRNA:   3'- aaAGCGcCGUU-GGUGCa--CGuCCGCGu -5'
21382 3' -58 NC_004812.1 + 5505 0.71 0.533608
Target:  5'- ---gGCGGCGGCCGCGgggaAGGCGUc -3'
miRNA:   3'- aaagCGCCGUUGGUGCacg-UCCGCGu -5'
21382 3' -58 NC_004812.1 + 5581 0.72 0.475442
Target:  5'- gUUCGCGGCGGCC-CGUcgGCGGGguccUGCGa -3'
miRNA:   3'- aAAGCGCCGUUGGuGCA--CGUCC----GCGU- -5'
21382 3' -58 NC_004812.1 + 6052 0.7 0.553575
Target:  5'- --gCGCGGCuaucgacACCGC--GCAGGCGCGg -3'
miRNA:   3'- aaaGCGCCGu------UGGUGcaCGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 6342 0.68 0.706366
Target:  5'- ---aGgGGCAGCaggggGCG-GCAGGCGCGc -3'
miRNA:   3'- aaagCgCCGUUGg----UGCaCGUCCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.