miRNA display CGI


Results 1 - 20 of 414 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 3' -58 NC_004812.1 + 42 0.72 0.46605
Target:  5'- --gCGCGGCgGGCCGCGgGCGcggcGGCGCGg -3'
miRNA:   3'- aaaGCGCCG-UUGGUGCaCGU----CCGCGU- -5'
21382 3' -58 NC_004812.1 + 566 0.78 0.190583
Target:  5'- --gCGCGcGCGGCCGCGUggagccGCGGGCGCGg -3'
miRNA:   3'- aaaGCGC-CGUUGGUGCA------CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 1419 0.66 0.77454
Target:  5'- --cCGaCGGCGGCCGCGgGgAGGgGCc -3'
miRNA:   3'- aaaGC-GCCGUUGGUGCaCgUCCgCGu -5'
21382 3' -58 NC_004812.1 + 2161 0.67 0.745905
Target:  5'- -cUCGCGGCGGcggccaccuCCACGgcgGC-GGCGUc -3'
miRNA:   3'- aaAGCGCCGUU---------GGUGCa--CGuCCGCGu -5'
21382 3' -58 NC_004812.1 + 2228 0.67 0.745905
Target:  5'- --cCGCGGCccAGCgCACGcGC-GGCGCGg -3'
miRNA:   3'- aaaGCGCCG--UUG-GUGCaCGuCCGCGU- -5'
21382 3' -58 NC_004812.1 + 2417 0.74 0.345985
Target:  5'- --gCGCGGcCAGCCcccagcGCGcGCAGGCGCGg -3'
miRNA:   3'- aaaGCGCC-GUUGG------UGCaCGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 2490 0.7 0.563642
Target:  5'- ---gGCGGCGGCCucGCGgGCGGGCGa- -3'
miRNA:   3'- aaagCGCCGUUGG--UGCaCGUCCGCgu -5'
21382 3' -58 NC_004812.1 + 2548 0.68 0.676015
Target:  5'- --gCGCGGCGguacucgcGCgGCG-GCAGGgGCAc -3'
miRNA:   3'- aaaGCGCCGU--------UGgUGCaCGUCCgCGU- -5'
21382 3' -58 NC_004812.1 + 2608 0.71 0.533608
Target:  5'- --gCGCGGUAgcgcacguuggcGCCGCGgccCAGGCGCGg -3'
miRNA:   3'- aaaGCGCCGU------------UGGUGCac-GUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 2713 0.66 0.793006
Target:  5'- --aCGCGGCcggaGGCCagcACG-GCGcGGCGCAg -3'
miRNA:   3'- aaaGCGCCG----UUGG---UGCaCGU-CCGCGU- -5'
21382 3' -58 NC_004812.1 + 2809 0.66 0.77454
Target:  5'- --aCGUGGCGGCgCGCGacgGCGGGCcCGu -3'
miRNA:   3'- aaaGCGCCGUUG-GUGCa--CGUCCGcGU- -5'
21382 3' -58 NC_004812.1 + 2889 0.68 0.68618
Target:  5'- ---gGCGGCGGCgGCGaGCAGGC-CGa -3'
miRNA:   3'- aaagCGCCGUUGgUGCaCGUCCGcGU- -5'
21382 3' -58 NC_004812.1 + 3170 0.67 0.759395
Target:  5'- -cUCGggguCGGCGACCugGcGCAuccaggcggcggcgcGGCGCAg -3'
miRNA:   3'- aaAGC----GCCGUUGGugCaCGU---------------CCGCGU- -5'
21382 3' -58 NC_004812.1 + 3350 0.67 0.764161
Target:  5'- -gUCGgucagcuCGGCGACgACGcGCGgGGCGCAg -3'
miRNA:   3'- aaAGC-------GCCGUUGgUGCaCGU-CCGCGU- -5'
21382 3' -58 NC_004812.1 + 3438 0.67 0.712375
Target:  5'- --aCGCGGCGccagccGCCGCGggggucgggcccgGCGGGCGg- -3'
miRNA:   3'- aaaGCGCCGU------UGGUGCa------------CGUCCGCgu -5'
21382 3' -58 NC_004812.1 + 3490 0.7 0.594107
Target:  5'- --gCGCGGCgGGCCGCGggcGCGGGCcCGg -3'
miRNA:   3'- aaaGCGCCG-UUGGUGCa--CGUCCGcGU- -5'
21382 3' -58 NC_004812.1 + 3584 0.78 0.210532
Target:  5'- ---gGCGGCGGCgGCGgGCGGGCGCGc -3'
miRNA:   3'- aaagCGCCGUUGgUGCaCGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 3643 0.67 0.740062
Target:  5'- --gCGCGGCGccgcCCGCGUcugcgucggccagcaGgGGGCGCAg -3'
miRNA:   3'- aaaGCGCCGUu---GGUGCA---------------CgUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 3707 0.72 0.475442
Target:  5'- -gUCgGCGGCGGCgGCGccgGCGGaGCGCAc -3'
miRNA:   3'- aaAG-CGCCGUUGgUGCa--CGUC-CGCGU- -5'
21382 3' -58 NC_004812.1 + 3800 0.67 0.76511
Target:  5'- ---gGCGGCGACgGCG-GCcucGGCGCc -3'
miRNA:   3'- aaagCGCCGUUGgUGCaCGu--CCGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.