miRNA display CGI


Results 1 - 20 of 414 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 3' -58 NC_004812.1 + 4794 0.73 0.411848
Target:  5'- --gCGgGGCGAgggCugGUGCGGGCGCGg -3'
miRNA:   3'- aaaGCgCCGUUg--GugCACGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 98624 0.75 0.32331
Target:  5'- -gUCGCGGCcgucgcGGCCGCGcUGCgcccGGGCGCGa -3'
miRNA:   3'- aaAGCGCCG------UUGGUGC-ACG----UCCGCGU- -5'
21382 3' -58 NC_004812.1 + 145738 0.74 0.338302
Target:  5'- --aCGCGGCGACCcgggGCGcGCGGGCGgAg -3'
miRNA:   3'- aaaGCGCCGUUGG----UGCaCGUCCGCgU- -5'
21382 3' -58 NC_004812.1 + 127925 0.74 0.345985
Target:  5'- --gCGCGGcCAGCCcccagcGCGcGCAGGCGCGg -3'
miRNA:   3'- aaaGCGCC-GUUGG------UGCaCGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 105395 0.74 0.345985
Target:  5'- -gUUGCcggauuaaGCAACCACGUGgGGGCGCGa -3'
miRNA:   3'- aaAGCGc-------CGUUGGUGCACgUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 35678 0.74 0.345985
Target:  5'- --cUGUGGC-GCCGCGUGCGcGGCGCc -3'
miRNA:   3'- aaaGCGCCGuUGGUGCACGU-CCGCGu -5'
21382 3' -58 NC_004812.1 + 130072 0.74 0.369777
Target:  5'- -cUCGCGGuCGGgCGCGaagaGCAGGCGCGu -3'
miRNA:   3'- aaAGCGCC-GUUgGUGCa---CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 100894 0.73 0.403199
Target:  5'- --aCGCGGgGugCGCcgagcgcggGUGCAGGCGCGc -3'
miRNA:   3'- aaaGCGCCgUugGUG---------CACGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 25895 0.73 0.403199
Target:  5'- --cCGCGGCGcCCGCGcccagcgccGCGGGCGCGc -3'
miRNA:   3'- aaaGCGCCGUuGGUGCa--------CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 136380 0.75 0.316002
Target:  5'- -gUCcCGGCGGCCGCGcuagccguUGCGGGCGCc -3'
miRNA:   3'- aaAGcGCCGUUGGUGC--------ACGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 103562 0.75 0.316002
Target:  5'- -cUgGCGGUGcagcuGCCGCGUGCuGGCGCGc -3'
miRNA:   3'- aaAgCGCCGU-----UGGUGCACGuCCGCGU- -5'
21382 3' -58 NC_004812.1 + 7281 0.75 0.308819
Target:  5'- ---gGCGGCGGCCGCGUGUgAGGcCGCc -3'
miRNA:   3'- aaagCGCCGUUGGUGCACG-UCC-GCGu -5'
21382 3' -58 NC_004812.1 + 121852 0.79 0.181244
Target:  5'- --cCGCGGCGGCCGCG-GCGaccacGGCGCAg -3'
miRNA:   3'- aaaGCGCCGUUGGUGCaCGU-----CCGCGU- -5'
21382 3' -58 NC_004812.1 + 566 0.78 0.190583
Target:  5'- --gCGCGcGCGGCCGCGUggagccGCGGGCGCGg -3'
miRNA:   3'- aaaGCGC-CGUUGGUGCA------CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 112790 0.78 0.195409
Target:  5'- --gCGCGGCGGCUcccccgucggGCGUGUGGGCGCGc -3'
miRNA:   3'- aaaGCGCCGUUGG----------UGCACGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 24842 0.78 0.195409
Target:  5'- -aUCGCGGCAcgcGCCGCGgGC-GGCGCGg -3'
miRNA:   3'- aaAGCGCCGU---UGGUGCaCGuCCGCGU- -5'
21382 3' -58 NC_004812.1 + 129092 0.78 0.210532
Target:  5'- ---gGCGGCGGCgGCGgGCGGGCGCGc -3'
miRNA:   3'- aaagCGCCGUUGgUGCaCGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 98395 0.77 0.226652
Target:  5'- --gCGCGGCGGCCGCGggGC-GGCGCc -3'
miRNA:   3'- aaaGCGCCGUUGGUGCa-CGuCCGCGu -5'
21382 3' -58 NC_004812.1 + 105177 0.76 0.262025
Target:  5'- --cUGCGaGCGGCCGCGUGCcugcgagcgcgGGGCGCGg -3'
miRNA:   3'- aaaGCGC-CGUUGGUGCACG-----------UCCGCGU- -5'
21382 3' -58 NC_004812.1 + 125212 0.75 0.301761
Target:  5'- --cCGCGGCGGCCGugaguuCGggcaGCAGGCGCGu -3'
miRNA:   3'- aaaGCGCCGUUGGU------GCa---CGUCCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.