miRNA display CGI


Results 1 - 20 of 414 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 3' -58 NC_004812.1 + 147857 0.66 0.783841
Target:  5'- -cUCGCGGCuGCCugGgggGUcggggccgucgAGGCGUu -3'
miRNA:   3'- aaAGCGCCGuUGGugCa--CG-----------UCCGCGu -5'
21382 3' -58 NC_004812.1 + 104873 0.66 0.787524
Target:  5'- --cCGCGGCGgucgucgucgccgucGCCGucgcCGUggcGCAGGCGCu -3'
miRNA:   3'- aaaGCGCCGU---------------UGGU----GCA---CGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 107831 0.66 0.81959
Target:  5'- gUUCGCGaGguAgCGgG-GCAGGCGCu -3'
miRNA:   3'- aAAGCGC-CguUgGUgCaCGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 128317 0.66 0.77454
Target:  5'- --aCGUGGCGGCgCGCGacgGCGGGCcCGu -3'
miRNA:   3'- aaaGCGCCGUUG-GUGCa--CGUCCGcGU- -5'
21382 3' -58 NC_004812.1 + 73782 0.66 0.77454
Target:  5'- --cCGCGGgcuCCGCGagcgggGCGGGCGCc -3'
miRNA:   3'- aaaGCGCCguuGGUGCa-----CGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 115481 0.66 0.793006
Target:  5'- --gCGCGuGCGGCCGCGc-CGGGCgGCGg -3'
miRNA:   3'- aaaGCGC-CGUUGGUGCacGUCCG-CGU- -5'
21382 3' -58 NC_004812.1 + 72541 0.66 0.782917
Target:  5'- --cCGCGGCGaacgggaACCGCGccucggGgGGGCGCc -3'
miRNA:   3'- aaaGCGCCGU-------UGGUGCa-----CgUCCGCGu -5'
21382 3' -58 NC_004812.1 + 155107 0.66 0.783841
Target:  5'- --gCGCGGCGG-CGCGggccgGCcGGCGCu -3'
miRNA:   3'- aaaGCGCCGUUgGUGCa----CGuCCGCGu -5'
21382 3' -58 NC_004812.1 + 153129 0.66 0.77454
Target:  5'- --cCGCGGCccGCCGCGcUGaC-GGCGCGa -3'
miRNA:   3'- aaaGCGCCGu-UGGUGC-AC-GuCCGCGU- -5'
21382 3' -58 NC_004812.1 + 98757 0.66 0.783841
Target:  5'- ---gGCGGCGACgACa-GgAGGCGCAg -3'
miRNA:   3'- aaagCGCCGUUGgUGcaCgUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 130306 0.66 0.77454
Target:  5'- -gUCGCGGUAGCgGgCGUagaAGGCGCc -3'
miRNA:   3'- aaAGCGCCGUUGgU-GCAcg-UCCGCGu -5'
21382 3' -58 NC_004812.1 + 13821 0.66 0.782917
Target:  5'- --cCGCGGCAGCCggGCGUacucccGCAGGguccgguUGCAg -3'
miRNA:   3'- aaaGCGCCGUUGG--UGCA------CGUCC-------GCGU- -5'
21382 3' -58 NC_004812.1 + 126927 0.66 0.77454
Target:  5'- --cCGaCGGCGGCCGCGgGgAGGgGCc -3'
miRNA:   3'- aaaGC-GCCGUUGGUGCaCgUCCgCGu -5'
21382 3' -58 NC_004812.1 + 72402 0.66 0.77454
Target:  5'- --cCGCGGau-CCACGUGagcauccgaGGGUGCAc -3'
miRNA:   3'- aaaGCGCCguuGGUGCACg--------UCCGCGU- -5'
21382 3' -58 NC_004812.1 + 39225 0.66 0.793006
Target:  5'- --gCGUGGCccgGGCCACGcgcgugGcCAGGCGCc -3'
miRNA:   3'- aaaGCGCCG---UUGGUGCa-----C-GUCCGCGu -5'
21382 3' -58 NC_004812.1 + 32585 0.66 0.793006
Target:  5'- --gCGCagGGCGGCCGuCGUGUacgggucguAGGCGCc -3'
miRNA:   3'- aaaGCG--CCGUUGGU-GCACG---------UCCGCGu -5'
21382 3' -58 NC_004812.1 + 110487 0.66 0.799335
Target:  5'- cUUCGCGaaggucacggacgaGgGGCUgGCGUGCGGGCGCc -3'
miRNA:   3'- aAAGCGC--------------CgUUGG-UGCACGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 18923 0.66 0.77454
Target:  5'- --cCGCGaGCAGCCGgGguUGCAGGCcCGg -3'
miRNA:   3'- aaaGCGC-CGUUGGUgC--ACGUCCGcGU- -5'
21382 3' -58 NC_004812.1 + 128221 0.66 0.793006
Target:  5'- --aCGCGGCcggaGGCCagcACG-GCGcGGCGCAg -3'
miRNA:   3'- aaaGCGCCG----UUGG---UGCaCGU-CCGCGU- -5'
21382 3' -58 NC_004812.1 + 117366 0.66 0.77454
Target:  5'- --gUGgGGCGGCCGCGcccgGCAG-CGCGg -3'
miRNA:   3'- aaaGCgCCGUUGGUGCa---CGUCcGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.