miRNA display CGI


Results 1 - 20 of 414 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 3' -58 NC_004812.1 + 142256 1.06 0.002505
Target:  5'- cUUUCGCGGCAACCACGUGCAGGCGCAg -3'
miRNA:   3'- -AAAGCGCCGUUGGUGCACGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 98430 0.86 0.060096
Target:  5'- --gUGCGGCGGCCGCGgggcgGCAGGCGCGg -3'
miRNA:   3'- aaaGCGCCGUUGGUGCa----CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 109715 0.81 0.136825
Target:  5'- --gCGCuGGCGGCCGCGcuggGCAGGCGCGa -3'
miRNA:   3'- aaaGCG-CCGUUGGUGCa---CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 121852 0.79 0.181244
Target:  5'- --cCGCGGCGGCCGCG-GCGaccacGGCGCAg -3'
miRNA:   3'- aaaGCGCCGUUGGUGCaCGU-----CCGCGU- -5'
21382 3' -58 NC_004812.1 + 152753 0.79 0.181244
Target:  5'- --cCGCGGCGGCCGCG-GCGaccacGGCGCAg -3'
miRNA:   3'- aaaGCGCCGUUGGUGCaCGU-----CCGCGU- -5'
21382 3' -58 NC_004812.1 + 31467 0.78 0.190583
Target:  5'- --gCGCGcGCGGCCGCGUggagccGCGGGCGCGg -3'
miRNA:   3'- aaaGCGC-CGUUGGUGCA------CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 566 0.78 0.190583
Target:  5'- --gCGCGcGCGGCCGCGUggagccGCGGGCGCGg -3'
miRNA:   3'- aaaGCGC-CGUUGGUGCA------CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 24842 0.78 0.195409
Target:  5'- -aUCGCGGCAcgcGCCGCGgGC-GGCGCGg -3'
miRNA:   3'- aaAGCGCCGU---UGGUGCaCGuCCGCGU- -5'
21382 3' -58 NC_004812.1 + 112790 0.78 0.195409
Target:  5'- --gCGCGGCGGCUcccccgucggGCGUGUGGGCGCGc -3'
miRNA:   3'- aaaGCGCCGUUGG----------UGCACGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 129092 0.78 0.210532
Target:  5'- ---gGCGGCGGCgGCGgGCGGGCGCGc -3'
miRNA:   3'- aaagCGCCGUUGgUGCaCGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 3584 0.78 0.210532
Target:  5'- ---gGCGGCGGCgGCGgGCGGGCGCGc -3'
miRNA:   3'- aaagCGCCGUUGgUGCaCGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 125076 0.78 0.215793
Target:  5'- -cUCGCGuGCAGaCCGCGUGCcuccGGGCGCu -3'
miRNA:   3'- aaAGCGC-CGUU-GGUGCACG----UCCGCGu -5'
21382 3' -58 NC_004812.1 + 98395 0.77 0.226652
Target:  5'- --gCGCGGCGGCCGCGggGC-GGCGCc -3'
miRNA:   3'- aaaGCGCCGUUGGUGCa-CGuCCGCGu -5'
21382 3' -58 NC_004812.1 + 81426 0.77 0.237971
Target:  5'- -cUCGCGGCA--CACGagcgGCAGGCGCGg -3'
miRNA:   3'- aaAGCGCCGUugGUGCa---CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 18434 0.77 0.249759
Target:  5'- --gCGCGGCGgggGCCGCGUccGguGGCGCGg -3'
miRNA:   3'- aaaGCGCCGU---UGGUGCA--CguCCGCGU- -5'
21382 3' -58 NC_004812.1 + 118832 0.76 0.255832
Target:  5'- -cUCGUGGC--CCACGUGgAGGCGCu -3'
miRNA:   3'- aaAGCGCCGuuGGUGCACgUCCGCGu -5'
21382 3' -58 NC_004812.1 + 105177 0.76 0.262025
Target:  5'- --cUGCGaGCGGCCGCGUGCcugcgagcgcgGGGCGCGg -3'
miRNA:   3'- aaaGCGC-CGUUGGUGCACG-----------UCCGCGU- -5'
21382 3' -58 NC_004812.1 + 81495 0.76 0.283996
Target:  5'- -gUCGCGGCGaucccggcgGCCGCGgccaagacgcuggaGCAGGCGCGc -3'
miRNA:   3'- aaAGCGCCGU---------UGGUGCa-------------CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 125212 0.75 0.301761
Target:  5'- --cCGCGGCGGCCGugaguuCGggcaGCAGGCGCGu -3'
miRNA:   3'- aaaGCGCCGUUGGU------GCa---CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 156113 0.75 0.301761
Target:  5'- --cCGCGGCGGCCGugaguuCGggcaGCAGGCGCGu -3'
miRNA:   3'- aaaGCGCCGUUGGU------GCa---CGUCCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.