Results 21 - 40 of 414 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21382 | 3' | -58 | NC_004812.1 | + | 125212 | 0.75 | 0.301761 |
Target: 5'- --cCGCGGCGGCCGugaguuCGggcaGCAGGCGCGu -3' miRNA: 3'- aaaGCGCCGUUGGU------GCa---CGUCCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 7281 | 0.75 | 0.308819 |
Target: 5'- ---gGCGGCGGCCGCGUGUgAGGcCGCc -3' miRNA: 3'- aaagCGCCGUUGGUGCACG-UCC-GCGu -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 38182 | 0.75 | 0.308819 |
Target: 5'- ---gGCGGCGGCCGCGUGUgAGGcCGCc -3' miRNA: 3'- aaagCGCCGUUGGUGCACG-UCC-GCGu -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 43847 | 0.75 | 0.308819 |
Target: 5'- -cUCGCGGC-GCCgACGUcCGGGCGCGg -3' miRNA: 3'- aaAGCGCCGuUGG-UGCAcGUCCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 47289 | 0.75 | 0.313113 |
Target: 5'- --gCGCGGCGccgccuccagcgccGCCggcgcguACGUGCGGGCGCGc -3' miRNA: 3'- aaaGCGCCGU--------------UGG-------UGCACGUCCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 136380 | 0.75 | 0.316002 |
Target: 5'- -gUCcCGGCGGCCGCGcuagccguUGCGGGCGCc -3' miRNA: 3'- aaAGcGCCGUUGGUGC--------ACGUCCGCGu -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 103562 | 0.75 | 0.316002 |
Target: 5'- -cUgGCGGUGcagcuGCCGCGUGCuGGCGCGc -3' miRNA: 3'- aaAgCGCCGU-----UGGUGCACGuCCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 146060 | 0.75 | 0.316002 |
Target: 5'- -gUCGCGGC-GCUACGUGgaccagucgaCGGGCGCGa -3' miRNA: 3'- aaAGCGCCGuUGGUGCAC----------GUCCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 98624 | 0.75 | 0.32331 |
Target: 5'- -gUCGCGGCcgucgcGGCCGCGcUGCgcccGGGCGCGa -3' miRNA: 3'- aaAGCGCCG------UUGGUGC-ACG----UCCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 145738 | 0.74 | 0.338302 |
Target: 5'- --aCGCGGCGACCcgggGCGcGCGGGCGgAg -3' miRNA: 3'- aaaGCGCCGUUGG----UGCaCGUCCGCgU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 2417 | 0.74 | 0.345985 |
Target: 5'- --gCGCGGcCAGCCcccagcGCGcGCAGGCGCGg -3' miRNA: 3'- aaaGCGCC-GUUGG------UGCaCGUCCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 127925 | 0.74 | 0.345985 |
Target: 5'- --gCGCGGcCAGCCcccagcGCGcGCAGGCGCGg -3' miRNA: 3'- aaaGCGCC-GUUGG------UGCaCGUCCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 105395 | 0.74 | 0.345985 |
Target: 5'- -gUUGCcggauuaaGCAACCACGUGgGGGCGCGa -3' miRNA: 3'- aaAGCGc-------CGUUGGUGCACgUCCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 35678 | 0.74 | 0.345985 |
Target: 5'- --cUGUGGC-GCCGCGUGCGcGGCGCc -3' miRNA: 3'- aaaGCGCCGuUGGUGCACGU-CCGCGu -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 130072 | 0.74 | 0.369777 |
Target: 5'- -cUCGCGGuCGGgCGCGaagaGCAGGCGCGu -3' miRNA: 3'- aaAGCGCC-GUUgGUGCa---CGUCCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 48092 | 0.74 | 0.369777 |
Target: 5'- -cUCgGCGGCcGCCGCcgugcgccccGUGCGGGCGCu -3' miRNA: 3'- aaAG-CGCCGuUGGUG----------CACGUCCGCGu -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 4564 | 0.74 | 0.369777 |
Target: 5'- -cUCGCGGuCGGgCGCGaagaGCAGGCGCGu -3' miRNA: 3'- aaAGCGCC-GUUgGUGCa---CGUCCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 100795 | 0.74 | 0.369777 |
Target: 5'- --aCGagaGGCGcugcGCCGCGUGCuGGCGCGu -3' miRNA: 3'- aaaGCg--CCGU----UGGUGCACGuCCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 60864 | 0.73 | 0.386249 |
Target: 5'- --gCGCGGCcGCCGCGagcgccagaucUGCAGGCGgAa -3' miRNA: 3'- aaaGCGCCGuUGGUGC-----------ACGUCCGCgU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 87055 | 0.73 | 0.386249 |
Target: 5'- --gCGCGGCcggcGCCGCGgGCAGGgGCGc -3' miRNA: 3'- aaaGCGCCGu---UGGUGCaCGUCCgCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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