miRNA display CGI


Results 21 - 40 of 414 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 3' -58 NC_004812.1 + 76117 0.66 0.810889
Target:  5'- ---gGCGGCGGCCuCGaGCucgucGGCGCGc -3'
miRNA:   3'- aaagCGCCGUUGGuGCaCGu----CCGCGU- -5'
21382 3' -58 NC_004812.1 + 109708 0.66 0.810889
Target:  5'- ---gGCGGCGGCCGcCGcGCccgaccccgGGGCGCu -3'
miRNA:   3'- aaagCGCCGUUGGU-GCaCG---------UCCGCGu -5'
21382 3' -58 NC_004812.1 + 121890 0.66 0.810889
Target:  5'- -aUCgGCGGCuGCCG-GUGUacgAGGCGCu -3'
miRNA:   3'- aaAG-CGCCGuUGGUgCACG---UCCGCGu -5'
21382 3' -58 NC_004812.1 + 20075 0.66 0.810889
Target:  5'- -cUCgGCGGCAGCCAggcCGUGUacaGGGUGa- -3'
miRNA:   3'- aaAG-CGCCGUUGGU---GCACG---UCCGCgu -5'
21382 3' -58 NC_004812.1 + 43682 0.66 0.810889
Target:  5'- ---aGCGGCu-CCGCGUugugggucggGCcGGCGCAg -3'
miRNA:   3'- aaagCGCCGuuGGUGCA----------CGuCCGCGU- -5'
21382 3' -58 NC_004812.1 + 56281 0.66 0.810889
Target:  5'- --cCGCGGCGgcccgcucgaggGCCugGUccagcacgcGCAGcGCGCGc -3'
miRNA:   3'- aaaGCGCCGU------------UGGugCA---------CGUC-CGCGU- -5'
21382 3' -58 NC_004812.1 + 80630 0.66 0.810889
Target:  5'- --cCGuCGaGCugcGCCGCcUGCAGGCGCu -3'
miRNA:   3'- aaaGC-GC-CGu--UGGUGcACGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 32986 0.66 0.810889
Target:  5'- -cUCGCGGUccguccGGCCgGCGUucGCGGGCGa- -3'
miRNA:   3'- aaAGCGCCG------UUGG-UGCA--CGUCCGCgu -5'
21382 3' -58 NC_004812.1 + 105396 0.66 0.810889
Target:  5'- -cUCGCuGGC-GCCG-GUGCcGGCGCu -3'
miRNA:   3'- aaAGCG-CCGuUGGUgCACGuCCGCGu -5'
21382 3' -58 NC_004812.1 + 129774 0.66 0.810009
Target:  5'- --cCGCGGCGGCguucucgCGCGccaGCAGGgGCGc -3'
miRNA:   3'- aaaGCGCCGUUG-------GUGCa--CGUCCgCGU- -5'
21382 3' -58 NC_004812.1 + 4266 0.66 0.810009
Target:  5'- --cCGCGGCGGCguucucgCGCGccaGCAGGgGCGc -3'
miRNA:   3'- aaaGCGCCGUUG-------GUGCa--CGUCCgCGU- -5'
21382 3' -58 NC_004812.1 + 20316 0.66 0.802025
Target:  5'- --gCGCGcGCAggcACCGCccccacGCGGGCGCGc -3'
miRNA:   3'- aaaGCGC-CGU---UGGUGca----CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 94697 0.66 0.802025
Target:  5'- --gCGCGGCGG-CGCGUGC-GGCccgaGCAc -3'
miRNA:   3'- aaaGCGCCGUUgGUGCACGuCCG----CGU- -5'
21382 3' -58 NC_004812.1 + 14191 0.66 0.802025
Target:  5'- --gCGCGGaCAACUGCGUcGCcgcgccagggccGGGCGCc -3'
miRNA:   3'- aaaGCGCC-GUUGGUGCA-CG------------UCCGCGu -5'
21382 3' -58 NC_004812.1 + 46311 0.66 0.802025
Target:  5'- --aCGgGGCGGgCACGgGCAGGCaCAc -3'
miRNA:   3'- aaaGCgCCGUUgGUGCaCGUCCGcGU- -5'
21382 3' -58 NC_004812.1 + 73548 0.66 0.802025
Target:  5'- --cCGCaGCGACCGCGgGCAGcaCGCGg -3'
miRNA:   3'- aaaGCGcCGUUGGUGCaCGUCc-GCGU- -5'
21382 3' -58 NC_004812.1 + 95674 0.66 0.802025
Target:  5'- -gUCGgcgcuguaCGGCAGCCGCGUGgucauUGGGUGCc -3'
miRNA:   3'- aaAGC--------GCCGUUGGUGCAC-----GUCCGCGu -5'
21382 3' -58 NC_004812.1 + 67679 0.66 0.802025
Target:  5'- -cUCGCcaccGGCGGCCAgGguuccgaGCAgGGCGCGg -3'
miRNA:   3'- aaAGCG----CCGUUGGUgCa------CGU-CCGCGU- -5'
21382 3' -58 NC_004812.1 + 49980 0.66 0.802025
Target:  5'- ---aGCGGCGACUcCGgugaGCuGGCGCu -3'
miRNA:   3'- aaagCGCCGUUGGuGCa---CGuCCGCGu -5'
21382 3' -58 NC_004812.1 + 122269 0.66 0.802025
Target:  5'- --cCaCGGgGACCACG-GgGGGCGCGg -3'
miRNA:   3'- aaaGcGCCgUUGGUGCaCgUCCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.