miRNA display CGI


Results 41 - 60 of 414 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 3' -58 NC_004812.1 + 122269 0.66 0.802025
Target:  5'- --cCaCGGgGACCACG-GgGGGCGCGg -3'
miRNA:   3'- aaaGcGCCgUUGGUGCaCgUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 94697 0.66 0.802025
Target:  5'- --gCGCGGCGG-CGCGUGC-GGCccgaGCAc -3'
miRNA:   3'- aaaGCGCCGUUgGUGCACGuCCG----CGU- -5'
21382 3' -58 NC_004812.1 + 153170 0.66 0.802025
Target:  5'- --cCaCGGgGACCACG-GgGGGCGCGg -3'
miRNA:   3'- aaaGcGCCgUUGGUGCaCgUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 134815 0.66 0.802025
Target:  5'- --cCGuCGGguACCGCG-GCGaauGGCGCGc -3'
miRNA:   3'- aaaGC-GCCguUGGUGCaCGU---CCGCGU- -5'
21382 3' -58 NC_004812.1 + 95674 0.66 0.802025
Target:  5'- -gUCGgcgcuguaCGGCAGCCGCGUGgucauUGGGUGCc -3'
miRNA:   3'- aaAGC--------GCCGUUGGUGCAC-----GUCCGCGu -5'
21382 3' -58 NC_004812.1 + 73548 0.66 0.802025
Target:  5'- --cCGCaGCGACCGCGgGCAGcaCGCGg -3'
miRNA:   3'- aaaGCGcCGUUGGUGCaCGUCc-GCGU- -5'
21382 3' -58 NC_004812.1 + 103241 0.66 0.802025
Target:  5'- -cUCGCGGacguaguuGAUCuCGcGCAGGCGCGc -3'
miRNA:   3'- aaAGCGCCg-------UUGGuGCaCGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 67679 0.66 0.802025
Target:  5'- -cUCGCcaccGGCGGCCAgGguuccgaGCAgGGCGCGg -3'
miRNA:   3'- aaAGCG----CCGUUGGUgCa------CGU-CCGCGU- -5'
21382 3' -58 NC_004812.1 + 14191 0.66 0.802025
Target:  5'- --gCGCGGaCAACUGCGUcGCcgcgccagggccGGGCGCc -3'
miRNA:   3'- aaaGCGCC-GUUGGUGCA-CG------------UCCGCGu -5'
21382 3' -58 NC_004812.1 + 110487 0.66 0.799335
Target:  5'- cUUCGCGaaggucacggacgaGgGGCUgGCGUGCGGGCGCc -3'
miRNA:   3'- aAAGCGC--------------CgUUGG-UGCACGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 115481 0.66 0.793006
Target:  5'- --gCGCGuGCGGCCGCGc-CGGGCgGCGg -3'
miRNA:   3'- aaaGCGC-CGUUGGUGCacGUCCG-CGU- -5'
21382 3' -58 NC_004812.1 + 32585 0.66 0.793006
Target:  5'- --gCGCagGGCGGCCGuCGUGUacgggucguAGGCGCc -3'
miRNA:   3'- aaaGCG--CCGUUGGU-GCACG---------UCCGCGu -5'
21382 3' -58 NC_004812.1 + 39225 0.66 0.793006
Target:  5'- --gCGUGGCccgGGCCACGcgcgugGcCAGGCGCc -3'
miRNA:   3'- aaaGCGCCG---UUGGUGCa-----C-GUCCGCGu -5'
21382 3' -58 NC_004812.1 + 118462 0.66 0.793006
Target:  5'- --gCGCGGUgcaGGCCACGU---GGCGCGu -3'
miRNA:   3'- aaaGCGCCG---UUGGUGCAcguCCGCGU- -5'
21382 3' -58 NC_004812.1 + 2713 0.66 0.793006
Target:  5'- --aCGCGGCcggaGGCCagcACG-GCGcGGCGCAg -3'
miRNA:   3'- aaaGCGCCG----UUGG---UGCaCGU-CCGCGU- -5'
21382 3' -58 NC_004812.1 + 128221 0.66 0.793006
Target:  5'- --aCGCGGCcggaGGCCagcACG-GCGcGGCGCAg -3'
miRNA:   3'- aaaGCGCCG----UUGG---UGCaCGU-CCGCGU- -5'
21382 3' -58 NC_004812.1 + 86753 0.66 0.793006
Target:  5'- --cCGCGucggccauggcGCAGCgGCGacGCGGGCGCGa -3'
miRNA:   3'- aaaGCGC-----------CGUUGgUGCa-CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 65763 0.66 0.793006
Target:  5'- ---aGCaccGCGACUACGUGCGccGGCGCc -3'
miRNA:   3'- aaagCGc--CGUUGGUGCACGU--CCGCGu -5'
21382 3' -58 NC_004812.1 + 78773 0.66 0.793006
Target:  5'- --gCGCGGCGcCCugGacGCccuGGCGCGg -3'
miRNA:   3'- aaaGCGCCGUuGGugCa-CGu--CCGCGU- -5'
21382 3' -58 NC_004812.1 + 87698 0.66 0.789357
Target:  5'- cUUUCGgugguccagcaUGGCGACCGCGagcgggaggcggcGCGGGCGCc -3'
miRNA:   3'- -AAAGC-----------GCCGUUGGUGCa------------CGUCCGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.