miRNA display CGI


Results 1 - 20 of 414 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 3' -58 NC_004812.1 + 156452 0.72 0.46605
Target:  5'- --gCGCGGCgGGCCGCGgGCGcggcGGCGCGg -3'
miRNA:   3'- aaaGCGCCG-UUGGUGCaCGU----CCGCGU- -5'
21382 3' -58 NC_004812.1 + 156324 0.68 0.676015
Target:  5'- --gCGCGGCcgGACgGCG-GCGGaGCGCGc -3'
miRNA:   3'- aaaGCGCCG--UUGgUGCaCGUC-CGCGU- -5'
21382 3' -58 NC_004812.1 + 156159 0.71 0.532616
Target:  5'- --gCGcCGGCGGCCcgggcucGCG-GCGGGCGCGc -3'
miRNA:   3'- aaaGC-GCCGUUGG-------UGCaCGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 156113 0.75 0.301761
Target:  5'- --cCGCGGCGGCCGugaguuCGggcaGCAGGCGCGu -3'
miRNA:   3'- aaaGCGCCGUUGGU------GCa---CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 155984 0.69 0.64534
Target:  5'- -cUCGgGGUugcagcCCGCGUGCucgcGGCGCGg -3'
miRNA:   3'- aaAGCgCCGuu----GGUGCACGu---CCGCGU- -5'
21382 3' -58 NC_004812.1 + 155853 0.67 0.726298
Target:  5'- --cCGCGGC-GCCGgGagGCgAGGCGCGc -3'
miRNA:   3'- aaaGCGCCGuUGGUgCa-CG-UCCGCGU- -5'
21382 3' -58 NC_004812.1 + 155107 0.66 0.783841
Target:  5'- --gCGCGGCGG-CGCGggccgGCcGGCGCu -3'
miRNA:   3'- aaaGCGCCGUUgGUGCa----CGuCCGCGu -5'
21382 3' -58 NC_004812.1 + 154143 0.67 0.726298
Target:  5'- --cCGcCGGCGccccggacuuccGCCGCG-GCgAGGCGCAc -3'
miRNA:   3'- aaaGC-GCCGU------------UGGUGCaCG-UCCGCGU- -5'
21382 3' -58 NC_004812.1 + 154026 0.67 0.726298
Target:  5'- -gUCgGCGGCGGCgGCGUcGgAGGCGgGg -3'
miRNA:   3'- aaAG-CGCCGUUGgUGCA-CgUCCGCgU- -5'
21382 3' -58 NC_004812.1 + 154000 0.67 0.76511
Target:  5'- --cCGCGGC-GCCaACGUGCGcuaccGCGCGc -3'
miRNA:   3'- aaaGCGCCGuUGG-UGCACGUc----CGCGU- -5'
21382 3' -58 NC_004812.1 + 153882 0.67 0.755562
Target:  5'- --gCGCaugGGCAGCCACGUcuucagGCAGGggaUGCAg -3'
miRNA:   3'- aaaGCG---CCGUUGGUGCA------CGUCC---GCGU- -5'
21382 3' -58 NC_004812.1 + 153762 0.68 0.665815
Target:  5'- -gUCcuCGGCGucgcGCCGCGUGCGGGgGUc -3'
miRNA:   3'- aaAGc-GCCGU----UGGUGCACGUCCgCGu -5'
21382 3' -58 NC_004812.1 + 153176 0.69 0.614568
Target:  5'- --cCGCGGCGgcuggcGCCGCGUGCcgccgGGGCcCAg -3'
miRNA:   3'- aaaGCGCCGU------UGGUGCACG-----UCCGcGU- -5'
21382 3' -58 NC_004812.1 + 153170 0.66 0.802025
Target:  5'- --cCaCGGgGACCACG-GgGGGCGCGg -3'
miRNA:   3'- aaaGcGCCgUUGGUGCaCgUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 153129 0.66 0.77454
Target:  5'- --cCGCGGCccGCCGCGcUGaC-GGCGCGa -3'
miRNA:   3'- aaaGCGCCGu-UGGUGC-AC-GuCCGCGU- -5'
21382 3' -58 NC_004812.1 + 152853 0.72 0.475442
Target:  5'- -gUCGcCGGCGccGCCGCGccgcUGCuGGCGCGc -3'
miRNA:   3'- aaAGC-GCCGU--UGGUGC----ACGuCCGCGU- -5'
21382 3' -58 NC_004812.1 + 152753 0.79 0.181244
Target:  5'- --cCGCGGCGGCCGCG-GCGaccacGGCGCAg -3'
miRNA:   3'- aaaGCGCCGUUGGUGCaCGU-----CCGCGU- -5'
21382 3' -58 NC_004812.1 + 152349 0.68 0.6963
Target:  5'- --gCGCGagaacGCcGCCGCG-GCGGGCGCc -3'
miRNA:   3'- aaaGCGC-----CGuUGGUGCaCGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 152183 0.67 0.745905
Target:  5'- --aCGCGGCccggGGCCGCcucggGCAGGCGa- -3'
miRNA:   3'- aaaGCGCCG----UUGGUGca---CGUCCGCgu -5'
21382 3' -58 NC_004812.1 + 151973 0.67 0.764161
Target:  5'- --cCGcCGGCGcgcccgcGCC-CGUGUGGGCGCc -3'
miRNA:   3'- aaaGC-GCCGU-------UGGuGCACGUCCGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.