miRNA display CGI


Results 61 - 80 of 414 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 3' -58 NC_004812.1 + 104873 0.66 0.787524
Target:  5'- --cCGCGGCGgucgucgucgccgucGCCGucgcCGUggcGCAGGCGCu -3'
miRNA:   3'- aaaGCGCCGU---------------UGGU----GCA---CGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 101140 0.66 0.787524
Target:  5'- cUUCGCGGCG--CGCGUGCGcuucugcgaccugacGGcCGCGg -3'
miRNA:   3'- aAAGCGCCGUugGUGCACGU---------------CC-GCGU- -5'
21382 3' -58 NC_004812.1 + 98757 0.66 0.783841
Target:  5'- ---gGCGGCGACgACa-GgAGGCGCAg -3'
miRNA:   3'- aaagCGCCGUUGgUGcaCgUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 29599 0.66 0.783841
Target:  5'- --gCGCGGCGG-CGCGggccgGCcGGCGCu -3'
miRNA:   3'- aaaGCGCCGUUgGUGCa----CGuCCGCGu -5'
21382 3' -58 NC_004812.1 + 155107 0.66 0.783841
Target:  5'- --gCGCGGCGG-CGCGggccgGCcGGCGCu -3'
miRNA:   3'- aaaGCGCCGUUgGUGCa----CGuCCGCGu -5'
21382 3' -58 NC_004812.1 + 133234 0.66 0.783841
Target:  5'- -aUCGUGGCGACggaCACGgcgGCcGGgGCGg -3'
miRNA:   3'- aaAGCGCCGUUG---GUGCa--CGuCCgCGU- -5'
21382 3' -58 NC_004812.1 + 53052 0.66 0.783841
Target:  5'- --aCGCGGCAgcugcACCGCcagGC-GGCGCu -3'
miRNA:   3'- aaaGCGCCGU-----UGGUGca-CGuCCGCGu -5'
21382 3' -58 NC_004812.1 + 79436 0.66 0.783841
Target:  5'- ---gGCGGCGgggacggcgccGCCGCGgGCGGGCuGCc -3'
miRNA:   3'- aaagCGCCGU-----------UGGUGCaCGUCCG-CGu -5'
21382 3' -58 NC_004812.1 + 47038 0.66 0.783841
Target:  5'- --aCG-GGCAGCgggguuUGCGUGCGGGCGUc -3'
miRNA:   3'- aaaGCgCCGUUG------GUGCACGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 136700 0.66 0.783841
Target:  5'- --gCGCGGUGGCgGCGgcGCGGGcCGCc -3'
miRNA:   3'- aaaGCGCCGUUGgUGCa-CGUCC-GCGu -5'
21382 3' -58 NC_004812.1 + 147857 0.66 0.783841
Target:  5'- -cUCGCGGCuGCCugGgggGUcggggccgucgAGGCGUu -3'
miRNA:   3'- aaAGCGCCGuUGGugCa--CG-----------UCCGCGu -5'
21382 3' -58 NC_004812.1 + 98919 0.66 0.783841
Target:  5'- gUUUGCGGC-GCaCGCG-GCcGGCGCc -3'
miRNA:   3'- aAAGCGCCGuUG-GUGCaCGuCCGCGu -5'
21382 3' -58 NC_004812.1 + 62776 0.66 0.783841
Target:  5'- --aCGCGGCAGCCGgGaacaGgGGGcCGCGg -3'
miRNA:   3'- aaaGCGCCGUUGGUgCa---CgUCC-GCGU- -5'
21382 3' -58 NC_004812.1 + 11307 0.66 0.783841
Target:  5'- --gCGCGGgGcGCCGCGggGCGGGgGCc -3'
miRNA:   3'- aaaGCGCCgU-UGGUGCa-CGUCCgCGu -5'
21382 3' -58 NC_004812.1 + 82837 0.66 0.783841
Target:  5'- -cUCGCGGagcCCGCGgGCAcccGGCGCc -3'
miRNA:   3'- aaAGCGCCguuGGUGCaCGU---CCGCGu -5'
21382 3' -58 NC_004812.1 + 74951 0.66 0.783841
Target:  5'- -gUCGC-GC-GCCGCGgucaGCGGGUGCGc -3'
miRNA:   3'- aaAGCGcCGuUGGUGCa---CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 41218 0.66 0.783841
Target:  5'- ---gGCGGCGACUACGcgcUGCGGuCGCc -3'
miRNA:   3'- aaagCGCCGUUGGUGC---ACGUCcGCGu -5'
21382 3' -58 NC_004812.1 + 13821 0.66 0.782917
Target:  5'- --cCGCGGCAGCCggGCGUacucccGCAGGguccgguUGCAg -3'
miRNA:   3'- aaaGCGCCGUUGG--UGCA------CGUCC-------GCGU- -5'
21382 3' -58 NC_004812.1 + 72541 0.66 0.782917
Target:  5'- --cCGCGGCGaacgggaACCGCGccucggGgGGGCGCc -3'
miRNA:   3'- aaaGCGCCGU-------UGGUGCa-----CgUCCGCGu -5'
21382 3' -58 NC_004812.1 + 72402 0.66 0.77454
Target:  5'- --cCGCGGau-CCACGUGagcauccgaGGGUGCAc -3'
miRNA:   3'- aaaGCGCCguuGGUGCACg--------UCCGCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.