miRNA display CGI


Results 41 - 60 of 414 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 3' -58 NC_004812.1 + 7281 0.75 0.308819
Target:  5'- ---gGCGGCGGCCGCGUGUgAGGcCGCc -3'
miRNA:   3'- aaagCGCCGUUGGUGCACG-UCC-GCGu -5'
21382 3' -58 NC_004812.1 + 7467 0.68 0.706366
Target:  5'- --cCGCGGgGACCGCGcgccccgGCGGccGCGCGg -3'
miRNA:   3'- aaaGCGCCgUUGGUGCa------CGUC--CGCGU- -5'
21382 3' -58 NC_004812.1 + 7525 0.69 0.628926
Target:  5'- --cCGCGGCGcGCCGCcccucccgcccacucGgggGCGGGCGCGg -3'
miRNA:   3'- aaaGCGCCGU-UGGUG---------------Ca--CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 7634 0.72 0.429486
Target:  5'- --gCGCGGCGGCCGgG-GUcgGGGCGCGa -3'
miRNA:   3'- aaaGCGCCGUUGGUgCaCG--UCCGCGU- -5'
21382 3' -58 NC_004812.1 + 8332 0.67 0.726298
Target:  5'- --gCGCcGCcGCCGCGcUGcCGGGCGCGg -3'
miRNA:   3'- aaaGCGcCGuUGGUGC-AC-GUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 11307 0.66 0.783841
Target:  5'- --gCGCGGgGcGCCGCGggGCGGGgGCc -3'
miRNA:   3'- aaaGCGCCgU-UGGUGCa-CGUCCgCGu -5'
21382 3' -58 NC_004812.1 + 13478 0.67 0.76511
Target:  5'- -gUCGCGGgGACgaaCACGUccgucagcGcCAGGCGCGg -3'
miRNA:   3'- aaAGCGCCgUUG---GUGCA--------C-GUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 13575 0.71 0.513903
Target:  5'- -cUCGCGcGCcACCuugagguggGCGUGCAGGCGg- -3'
miRNA:   3'- aaAGCGC-CGuUGG---------UGCACGUCCGCgu -5'
21382 3' -58 NC_004812.1 + 13821 0.66 0.782917
Target:  5'- --cCGCGGCAGCCggGCGUacucccGCAGGguccgguUGCAg -3'
miRNA:   3'- aaaGCGCCGUUGG--UGCA------CGUCC-------GCGU- -5'
21382 3' -58 NC_004812.1 + 14191 0.66 0.802025
Target:  5'- --gCGCGGaCAACUGCGUcGCcgcgccagggccGGGCGCc -3'
miRNA:   3'- aaaGCGCC-GUUGGUGCA-CG------------UCCGCGu -5'
21382 3' -58 NC_004812.1 + 14531 0.68 0.655586
Target:  5'- ---gGCGGCAgcuggGCCGCGaccGCGGGgGCGg -3'
miRNA:   3'- aaagCGCCGU-----UGGUGCa--CGUCCgCGU- -5'
21382 3' -58 NC_004812.1 + 14862 0.72 0.43847
Target:  5'- --cCGCGGCcgcccgacgacGGCUggGUGCAGGUGCAc -3'
miRNA:   3'- aaaGCGCCG-----------UUGGugCACGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 15003 0.69 0.604327
Target:  5'- --gCGCGGCAgGuuGCGgacgggGCAGGCGCc -3'
miRNA:   3'- aaaGCGCCGU-UggUGCa-----CGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 15182 0.67 0.715371
Target:  5'- --cCGuCGGCGcccagaggaggacGCUGCG-GCAGGCGCGc -3'
miRNA:   3'- aaaGC-GCCGU-------------UGGUGCaCGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 15966 0.7 0.563642
Target:  5'- --gCGUGGCGccGCCGCGcgGC-GGCGCGu -3'
miRNA:   3'- aaaGCGCCGU--UGGUGCa-CGuCCGCGU- -5'
21382 3' -58 NC_004812.1 + 16199 0.66 0.802025
Target:  5'- gUUgGCGGCGGCgACGgugggGguGGUGUc -3'
miRNA:   3'- aAAgCGCCGUUGgUGCa----CguCCGCGu -5'
21382 3' -58 NC_004812.1 + 17478 0.68 0.665815
Target:  5'- --cCGCGGCGgauGCCGCG-GU-GGCGCu -3'
miRNA:   3'- aaaGCGCCGU---UGGUGCaCGuCCGCGu -5'
21382 3' -58 NC_004812.1 + 17956 0.67 0.716368
Target:  5'- -gUCGCccgGGCGACgGCGgccGuCAGGCGCc -3'
miRNA:   3'- aaAGCG---CCGUUGgUGCa--C-GUCCGCGu -5'
21382 3' -58 NC_004812.1 + 18359 0.7 0.543561
Target:  5'- --cCGCGGCcGCCGCGgcguacGCGGGCccGCGg -3'
miRNA:   3'- aaaGCGCCGuUGGUGCa-----CGUCCG--CGU- -5'
21382 3' -58 NC_004812.1 + 18434 0.77 0.249759
Target:  5'- --gCGCGGCGgggGCCGCGUccGguGGCGCGg -3'
miRNA:   3'- aaaGCGCCGU---UGGUGCA--CguCCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.