Results 41 - 60 of 366 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
21382 | 5' | -59.3 | NC_004812.1 | + | 119419 | 0.66 | 0.710139 |
Target: 5'- gGGCGCCgCUcC-CCCUGGCCGuGCc-- -3' miRNA: 3'- -UCGUGGgGAuGuGGGACCGGU-CGuug -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 75090 | 0.66 | 0.729835 |
Target: 5'- gAGCGCgCCUGCuccagcgUCUUGGCC-GCGGCc -3' miRNA: 3'- -UCGUGgGGAUGu------GGGACCGGuCGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 50691 | 0.66 | 0.710139 |
Target: 5'- aGGCGCUCCUcgggcgcgacGgACCCaGGCCA-CGACg -3' miRNA: 3'- -UCGUGGGGA----------UgUGGGaCCGGUcGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 113634 | 0.66 | 0.710139 |
Target: 5'- gAGCACCCggCUGCGCCCguuCCuGCAGu -3' miRNA: 3'- -UCGUGGG--GAUGUGGGaccGGuCGUUg -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 2924 | 0.66 | 0.758732 |
Target: 5'- gAGCccGCCCCguccucgguCACCCUcGGCgGGCGc- -3' miRNA: 3'- -UCG--UGGGGau-------GUGGGA-CCGgUCGUug -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 82694 | 0.66 | 0.710139 |
Target: 5'- aGGCGCCgCUGgGCgCC-GGCCgacGGCGGCu -3' miRNA: 3'- -UCGUGGgGAUgUG-GGaCCGG---UCGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 51540 | 0.66 | 0.710139 |
Target: 5'- cGGCGCCggggggccagUgUGCGCCCgcGGCCggAGCGGCg -3' miRNA: 3'- -UCGUGG----------GgAUGUGGGa-CCGG--UCGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 92563 | 0.66 | 0.710139 |
Target: 5'- cGGCACggCCCgugGCcgucguCgCCUGGCUGGCGGCg -3' miRNA: 3'- -UCGUG--GGGa--UGu-----G-GGACCGGUCGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 123919 | 0.66 | 0.720024 |
Target: 5'- uGGCGCCCgCggu-CCCgGGCCGGCccGGCc -3' miRNA: 3'- -UCGUGGG-GauguGGGaCCGGUCG--UUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 17970 | 0.66 | 0.710139 |
Target: 5'- cAGCGCUCCgcgaaACACCgccuccauCUcGGCCAGCAc- -3' miRNA: 3'- -UCGUGGGGa----UGUGG--------GA-CCGGUCGUug -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 124892 | 0.66 | 0.729835 |
Target: 5'- cGgACCCCcaggAC-CCCcGGCCGGgCGGCg -3' miRNA: 3'- uCgUGGGGa---UGuGGGaCCGGUC-GUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 142143 | 0.66 | 0.720024 |
Target: 5'- gGGCcccGCCCCcGCGCCCUccGGCCA-CAc- -3' miRNA: 3'- -UCG---UGGGGaUGUGGGA--CCGGUcGUug -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 37661 | 0.66 | 0.729835 |
Target: 5'- cGCAgUCCcACACCagcggGGgCAGCAGCg -3' miRNA: 3'- uCGUgGGGaUGUGGga---CCgGUCGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 60125 | 0.66 | 0.729835 |
Target: 5'- cGCGCCagcggcguguCCUGC-CCCUccaggaggGGCCAGgCGGCg -3' miRNA: 3'- uCGUGG----------GGAUGuGGGA--------CCGGUC-GUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 49407 | 0.66 | 0.710139 |
Target: 5'- aGGCGgCCC-GCGCCgUGGCCccgGGCcGCc -3' miRNA: 3'- -UCGUgGGGaUGUGGgACCGG---UCGuUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 96281 | 0.66 | 0.717066 |
Target: 5'- uGGCGCCCCcgcgcaaccucaccUGCGaguucaCCUGGCaccGCGACu -3' miRNA: 3'- -UCGUGGGG--------------AUGUg-----GGACCGgu-CGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 140023 | 0.66 | 0.720024 |
Target: 5'- uGCGgCCCUGcCGCCCgcgGGcCCGGUcGCc -3' miRNA: 3'- uCGUgGGGAU-GUGGGa--CC-GGUCGuUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 55588 | 0.66 | 0.720024 |
Target: 5'- cAGCGCCCC-AgGCUC--GCCAGCGAg -3' miRNA: 3'- -UCGUGGGGaUgUGGGacCGGUCGUUg -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 21427 | 0.66 | 0.719039 |
Target: 5'- cAGCGCCCCUugaagcgGCGgCagaggaGGCCGGUGACc -3' miRNA: 3'- -UCGUGGGGA-------UGUgGga----CCGGUCGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 10089 | 0.66 | 0.710139 |
Target: 5'- cAGgACCCCUAUcaccaGCCC-GGCCAGg--- -3' miRNA: 3'- -UCgUGGGGAUG-----UGGGaCCGGUCguug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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