miRNA display CGI


Results 21 - 40 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 5' -59.3 NC_004812.1 + 63083 0.66 0.749198
Target:  5'- cGCACCC--GCGCCCcgccucGGCCuucgucaccucgAGCGACg -3'
miRNA:   3'- uCGUGGGgaUGUGGGa-----CCGG------------UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 21427 0.66 0.719039
Target:  5'- cAGCGCCCCUugaagcgGCGgCagaggaGGCCGGUGACc -3'
miRNA:   3'- -UCGUGGGGA-------UGUgGga----CCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 129154 0.66 0.739563
Target:  5'- cGGCGCCgCCcGCGUCUgcgucGGCCAGCAGg -3'
miRNA:   3'- -UCGUGG-GGaUGUGGGa----CCGGUCGUUg -5'
21382 5' -59.3 NC_004812.1 + 98937 0.66 0.762515
Target:  5'- cGGCGCCCggaagAgACCCggGGCCgcggacgaccuguuuGGCGACg -3'
miRNA:   3'- -UCGUGGGga---UgUGGGa-CCGG---------------UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 56331 0.66 0.739563
Target:  5'- cGCGCCgCCUccgagaACCCggaGGCguGCGGCa -3'
miRNA:   3'- uCGUGG-GGAug----UGGGa--CCGguCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 55588 0.66 0.720024
Target:  5'- cAGCGCCCC-AgGCUC--GCCAGCGAg -3'
miRNA:   3'- -UCGUGGGGaUgUGGGacCGGUCGUUg -5'
21382 5' -59.3 NC_004812.1 + 143323 0.66 0.749198
Target:  5'- cGGaCGCCCCgccGCGCCgaGGCCuccGCcGCc -3'
miRNA:   3'- -UC-GUGGGGa--UGUGGgaCCGGu--CGuUG- -5'
21382 5' -59.3 NC_004812.1 + 50691 0.66 0.710139
Target:  5'- aGGCGCUCCUcgggcgcgacGgACCCaGGCCA-CGACg -3'
miRNA:   3'- -UCGUGGGGA----------UgUGGGaCCGGUcGUUG- -5'
21382 5' -59.3 NC_004812.1 + 140023 0.66 0.720024
Target:  5'- uGCGgCCCUGcCGCCCgcgGGcCCGGUcGCc -3'
miRNA:   3'- uCGUgGGGAU-GUGGGa--CC-GGUCGuUG- -5'
21382 5' -59.3 NC_004812.1 + 74257 0.66 0.720024
Target:  5'- aGGUACgCCU-CGCCCcGGCCGcGCAc- -3'
miRNA:   3'- -UCGUGgGGAuGUGGGaCCGGU-CGUug -5'
21382 5' -59.3 NC_004812.1 + 84899 0.66 0.720024
Target:  5'- gAGCGacuUCCCg--GCCCUGGCCcGaCAGCa -3'
miRNA:   3'- -UCGU---GGGGaugUGGGACCGGuC-GUUG- -5'
21382 5' -59.3 NC_004812.1 + 130947 0.66 0.749198
Target:  5'- cAGCGCCCgggccgucucCUcCACCauggaGGCCAGCAGg -3'
miRNA:   3'- -UCGUGGG----------GAuGUGGga---CCGGUCGUUg -5'
21382 5' -59.3 NC_004812.1 + 95844 0.66 0.749198
Target:  5'- cAGCGCCCCcaaccGgACCgaGGCgCGGguGCg -3'
miRNA:   3'- -UCGUGGGGa----UgUGGgaCCG-GUCguUG- -5'
21382 5' -59.3 NC_004812.1 + 139838 0.66 0.739563
Target:  5'- gGGC-CCCCU-CACCCUccGGCCcccGCGc- -3'
miRNA:   3'- -UCGuGGGGAuGUGGGA--CCGGu--CGUug -5'
21382 5' -59.3 NC_004812.1 + 124892 0.66 0.729835
Target:  5'- cGgACCCCcaggAC-CCCcGGCCGGgCGGCg -3'
miRNA:   3'- uCgUGGGGa---UGuGGGaCCGGUC-GUUG- -5'
21382 5' -59.3 NC_004812.1 + 69847 0.66 0.739563
Target:  5'- cGCGCCCgcgucgcgCUGCGCCaUGGCCGacGCGGa -3'
miRNA:   3'- uCGUGGG--------GAUGUGGgACCGGU--CGUUg -5'
21382 5' -59.3 NC_004812.1 + 75090 0.66 0.729835
Target:  5'- gAGCGCgCCUGCuccagcgUCUUGGCC-GCGGCc -3'
miRNA:   3'- -UCGUGgGGAUGu------GGGACCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 3488 0.66 0.749198
Target:  5'- gAGC-CCCCcGCGCCCgcccccgGGgCGGCGc- -3'
miRNA:   3'- -UCGuGGGGaUGUGGGa------CCgGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 92505 0.66 0.749198
Target:  5'- cGGCGgCCCgGCuuCCggGGuCCGGCGACg -3'
miRNA:   3'- -UCGUgGGGaUGugGGa-CC-GGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 51540 0.66 0.710139
Target:  5'- cGGCGCCggggggccagUgUGCGCCCgcGGCCggAGCGGCg -3'
miRNA:   3'- -UCGUGG----------GgAUGUGGGa-CCGG--UCGUUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.