Results 21 - 40 of 366 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21382 | 5' | -59.3 | NC_004812.1 | + | 63083 | 0.66 | 0.749198 |
Target: 5'- cGCACCC--GCGCCCcgccucGGCCuucgucaccucgAGCGACg -3' miRNA: 3'- uCGUGGGgaUGUGGGa-----CCGG------------UCGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 21427 | 0.66 | 0.719039 |
Target: 5'- cAGCGCCCCUugaagcgGCGgCagaggaGGCCGGUGACc -3' miRNA: 3'- -UCGUGGGGA-------UGUgGga----CCGGUCGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 129154 | 0.66 | 0.739563 |
Target: 5'- cGGCGCCgCCcGCGUCUgcgucGGCCAGCAGg -3' miRNA: 3'- -UCGUGG-GGaUGUGGGa----CCGGUCGUUg -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 98937 | 0.66 | 0.762515 |
Target: 5'- cGGCGCCCggaagAgACCCggGGCCgcggacgaccuguuuGGCGACg -3' miRNA: 3'- -UCGUGGGga---UgUGGGa-CCGG---------------UCGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 56331 | 0.66 | 0.739563 |
Target: 5'- cGCGCCgCCUccgagaACCCggaGGCguGCGGCa -3' miRNA: 3'- uCGUGG-GGAug----UGGGa--CCGguCGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 55588 | 0.66 | 0.720024 |
Target: 5'- cAGCGCCCC-AgGCUC--GCCAGCGAg -3' miRNA: 3'- -UCGUGGGGaUgUGGGacCGGUCGUUg -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 143323 | 0.66 | 0.749198 |
Target: 5'- cGGaCGCCCCgccGCGCCgaGGCCuccGCcGCc -3' miRNA: 3'- -UC-GUGGGGa--UGUGGgaCCGGu--CGuUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 50691 | 0.66 | 0.710139 |
Target: 5'- aGGCGCUCCUcgggcgcgacGgACCCaGGCCA-CGACg -3' miRNA: 3'- -UCGUGGGGA----------UgUGGGaCCGGUcGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 140023 | 0.66 | 0.720024 |
Target: 5'- uGCGgCCCUGcCGCCCgcgGGcCCGGUcGCc -3' miRNA: 3'- uCGUgGGGAU-GUGGGa--CC-GGUCGuUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 74257 | 0.66 | 0.720024 |
Target: 5'- aGGUACgCCU-CGCCCcGGCCGcGCAc- -3' miRNA: 3'- -UCGUGgGGAuGUGGGaCCGGU-CGUug -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 84899 | 0.66 | 0.720024 |
Target: 5'- gAGCGacuUCCCg--GCCCUGGCCcGaCAGCa -3' miRNA: 3'- -UCGU---GGGGaugUGGGACCGGuC-GUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 130947 | 0.66 | 0.749198 |
Target: 5'- cAGCGCCCgggccgucucCUcCACCauggaGGCCAGCAGg -3' miRNA: 3'- -UCGUGGG----------GAuGUGGga---CCGGUCGUUg -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 95844 | 0.66 | 0.749198 |
Target: 5'- cAGCGCCCCcaaccGgACCgaGGCgCGGguGCg -3' miRNA: 3'- -UCGUGGGGa----UgUGGgaCCG-GUCguUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 139838 | 0.66 | 0.739563 |
Target: 5'- gGGC-CCCCU-CACCCUccGGCCcccGCGc- -3' miRNA: 3'- -UCGuGGGGAuGUGGGA--CCGGu--CGUug -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 124892 | 0.66 | 0.729835 |
Target: 5'- cGgACCCCcaggAC-CCCcGGCCGGgCGGCg -3' miRNA: 3'- uCgUGGGGa---UGuGGGaCCGGUC-GUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 69847 | 0.66 | 0.739563 |
Target: 5'- cGCGCCCgcgucgcgCUGCGCCaUGGCCGacGCGGa -3' miRNA: 3'- uCGUGGG--------GAUGUGGgACCGGU--CGUUg -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 75090 | 0.66 | 0.729835 |
Target: 5'- gAGCGCgCCUGCuccagcgUCUUGGCC-GCGGCc -3' miRNA: 3'- -UCGUGgGGAUGu------GGGACCGGuCGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 3488 | 0.66 | 0.749198 |
Target: 5'- gAGC-CCCCcGCGCCCgcccccgGGgCGGCGc- -3' miRNA: 3'- -UCGuGGGGaUGUGGGa------CCgGUCGUug -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 92505 | 0.66 | 0.749198 |
Target: 5'- cGGCGgCCCgGCuuCCggGGuCCGGCGACg -3' miRNA: 3'- -UCGUgGGGaUGugGGa-CC-GGUCGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 51540 | 0.66 | 0.710139 |
Target: 5'- cGGCGCCggggggccagUgUGCGCCCgcGGCCggAGCGGCg -3' miRNA: 3'- -UCGUGG----------GgAUGUGGGa-CCGG--UCGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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