miRNA display CGI


Results 1 - 20 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 5' -59.3 NC_004812.1 + 17970 0.66 0.710139
Target:  5'- cAGCGCUCCgcgaaACACCgccuccauCUcGGCCAGCAc- -3'
miRNA:   3'- -UCGUGGGGa----UGUGG--------GA-CCGGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 16095 0.66 0.7269
Target:  5'- cGGCACCaucgagcgCCUGCGCgagacgaacacggaCCUGGCgAcGCAGCu -3'
miRNA:   3'- -UCGUGG--------GGAUGUG--------------GGACCGgU-CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 64494 0.66 0.728858
Target:  5'- cGCAUCCCccagagcACGCCCgaggaGGCCgugcuccucgacaAGCAGCa -3'
miRNA:   3'- uCGUGGGGa------UGUGGGa----CCGG-------------UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 21427 0.66 0.719039
Target:  5'- cAGCGCCCCUugaagcgGCGgCagaggaGGCCGGUGACc -3'
miRNA:   3'- -UCGUGGGGA-------UGUgGga----CCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 51540 0.66 0.710139
Target:  5'- cGGCGCCggggggccagUgUGCGCCCgcGGCCggAGCGGCg -3'
miRNA:   3'- -UCGUGG----------GgAUGUGGGa-CCGG--UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 113634 0.66 0.710139
Target:  5'- gAGCACCCggCUGCGCCCguuCCuGCAGu -3'
miRNA:   3'- -UCGUGGG--GAUGUGGGaccGGuCGUUg -5'
21382 5' -59.3 NC_004812.1 + 49407 0.66 0.710139
Target:  5'- aGGCGgCCC-GCGCCgUGGCCccgGGCcGCc -3'
miRNA:   3'- -UCGUgGGGaUGUGGgACCGG---UCGuUG- -5'
21382 5' -59.3 NC_004812.1 + 30258 0.66 0.720024
Target:  5'- aAGUGCCaCC-ACGCCCccgGGCCcagggcGCAGCa -3'
miRNA:   3'- -UCGUGG-GGaUGUGGGa--CCGGu-----CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 84899 0.66 0.720024
Target:  5'- gAGCGacuUCCCg--GCCCUGGCCcGaCAGCa -3'
miRNA:   3'- -UCGU---GGGGaugUGGGACCGGuC-GUUG- -5'
21382 5' -59.3 NC_004812.1 + 50691 0.66 0.710139
Target:  5'- aGGCGCUCCUcgggcgcgacGgACCCaGGCCA-CGACg -3'
miRNA:   3'- -UCGUGGGGA----------UgUGGGaCCGGUcGUUG- -5'
21382 5' -59.3 NC_004812.1 + 37661 0.66 0.729835
Target:  5'- cGCAgUCCcACACCagcggGGgCAGCAGCg -3'
miRNA:   3'- uCGUgGGGaUGUGGga---CCgGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 140023 0.66 0.720024
Target:  5'- uGCGgCCCUGcCGCCCgcgGGcCCGGUcGCc -3'
miRNA:   3'- uCGUgGGGAU-GUGGGa--CC-GGUCGuUG- -5'
21382 5' -59.3 NC_004812.1 + 10089 0.66 0.710139
Target:  5'- cAGgACCCCUAUcaccaGCCC-GGCCAGg--- -3'
miRNA:   3'- -UCgUGGGGAUG-----UGGGaCCGGUCguug -5'
21382 5' -59.3 NC_004812.1 + 82694 0.66 0.710139
Target:  5'- aGGCGCCgCUGgGCgCC-GGCCgacGGCGGCu -3'
miRNA:   3'- -UCGUGGgGAUgUG-GGaCCGG---UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 76766 0.66 0.710139
Target:  5'- gGGUGCUCCaGgGCCCcccgguacUGGCCcAGCAGCc -3'
miRNA:   3'- -UCGUGGGGaUgUGGG--------ACCGG-UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 98937 0.66 0.762515
Target:  5'- cGGCGCCCggaagAgACCCggGGCCgcggacgaccuguuuGGCGACg -3'
miRNA:   3'- -UCGUGGGga---UgUGGGa-CCGG---------------UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 55588 0.66 0.720024
Target:  5'- cAGCGCCCC-AgGCUC--GCCAGCGAg -3'
miRNA:   3'- -UCGUGGGGaUgUGGGacCGGUCGUUg -5'
21382 5' -59.3 NC_004812.1 + 74257 0.66 0.720024
Target:  5'- aGGUACgCCU-CGCCCcGGCCGcGCAc- -3'
miRNA:   3'- -UCGUGgGGAuGUGGGaCCGGU-CGUug -5'
21382 5' -59.3 NC_004812.1 + 119419 0.66 0.710139
Target:  5'- gGGCGCCgCUcC-CCCUGGCCGuGCc-- -3'
miRNA:   3'- -UCGUGGgGAuGuGGGACCGGU-CGuug -5'
21382 5' -59.3 NC_004812.1 + 96281 0.66 0.717066
Target:  5'- uGGCGCCCCcgcgcaaccucaccUGCGaguucaCCUGGCaccGCGACu -3'
miRNA:   3'- -UCGUGGGG--------------AUGUg-----GGACCGgu-CGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.