miRNA display CGI


Results 1 - 20 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 5' -59.3 NC_004812.1 + 97440 0.72 0.383652
Target:  5'- cGGCAUCaaggccugCCUGCGCCCgucggacgGcGCCAGCGGCa -3'
miRNA:   3'- -UCGUGG--------GGAUGUGGGa-------C-CGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 109611 0.74 0.321558
Target:  5'- uGGCGCCCCggggGCaggcguucgcaGCCCUGGCgC-GCGACg -3'
miRNA:   3'- -UCGUGGGGa---UG-----------UGGGACCG-GuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 105217 0.73 0.354749
Target:  5'- cGgGCCCCgggcucuucgaaggACACCCgGGCgGGCGACg -3'
miRNA:   3'- uCgUGGGGa-------------UGUGGGaCCGgUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 59092 0.73 0.359458
Target:  5'- uGCGCCCCUcgACCgaCUGGCUGGCAAa -3'
miRNA:   3'- uCGUGGGGAugUGG--GACCGGUCGUUg -5'
21382 5' -59.3 NC_004812.1 + 87850 0.72 0.375468
Target:  5'- uGUACCUgga-GCCCUGGCaCAGCGACa -3'
miRNA:   3'- uCGUGGGgaugUGGGACCG-GUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 133659 0.72 0.375468
Target:  5'- cGCACCCCU-CGCCCcgagcgGGCgAGgGACu -3'
miRNA:   3'- uCGUGGGGAuGUGGGa-----CCGgUCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 69551 0.72 0.375468
Target:  5'- cGCGCCCCU--GCCCgcgGcGCCGGCcGCg -3'
miRNA:   3'- uCGUGGGGAugUGGGa--C-CGGUCGuUG- -5'
21382 5' -59.3 NC_004812.1 + 153584 0.72 0.378727
Target:  5'- gGGCaaccGCCUCUGCggGCCCgacacggccgccugGGCCGGCAACu -3'
miRNA:   3'- -UCG----UGGGGAUG--UGGGa-------------CCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 96650 0.72 0.383652
Target:  5'- cGGCGCCgCgcgAC-CCCgugGGCCAGCAGg -3'
miRNA:   3'- -UCGUGGgGa--UGuGGGa--CCGGUCGUUg -5'
21382 5' -59.3 NC_004812.1 + 117327 0.74 0.307257
Target:  5'- cGCGCCCCcGgACCCcgGGCCccGGCGGCc -3'
miRNA:   3'- uCGUGGGGaUgUGGGa-CCGG--UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 145450 0.74 0.307257
Target:  5'- uGGCACCgaCCUACAUucgCCUGGCCGaCGACg -3'
miRNA:   3'- -UCGUGG--GGAUGUG---GGACCGGUcGUUG- -5'
21382 5' -59.3 NC_004812.1 + 140101 0.74 0.293447
Target:  5'- gAGCgcaucGCCCCcGCGCCCcccGGCCGGUGGCg -3'
miRNA:   3'- -UCG-----UGGGGaUGUGGGa--CCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 59779 0.8 0.126935
Target:  5'- cGCACCgCUcgagguagaacaGCAUCUUGGCCAGCAGCg -3'
miRNA:   3'- uCGUGGgGA------------UGUGGGACCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 51317 0.79 0.151865
Target:  5'- gGGCAgCCCUACGCCCaGGCCAGg--- -3'
miRNA:   3'- -UCGUgGGGAUGUGGGaCCGGUCguug -5'
21382 5' -59.3 NC_004812.1 + 56263 0.78 0.181162
Target:  5'- cGCGCCCCUGCGCCUc-GCCcGCGGCg -3'
miRNA:   3'- uCGUGGGGAUGUGGGacCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 119341 0.77 0.195187
Target:  5'- cGCugCCC-GCGuCCCUGGCgGGCGGCg -3'
miRNA:   3'- uCGugGGGaUGU-GGGACCGgUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 142405 0.77 0.195187
Target:  5'- gGGCGCCCg---GCCCUGGCgCGGCGACg -3'
miRNA:   3'- -UCGUGGGgaugUGGGACCG-GUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 135600 0.75 0.280127
Target:  5'- uGCACCCCcGCgGCCgaGGCgCGGCGGCg -3'
miRNA:   3'- uCGUGGGGaUG-UGGgaCCG-GUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 142244 0.75 0.280127
Target:  5'- uGCGCCgCC-GCGCCCgcgcGGCCGGCAAg -3'
miRNA:   3'- uCGUGG-GGaUGUGGGa---CCGGUCGUUg -5'
21382 5' -59.3 NC_004812.1 + 40221 0.74 0.286726
Target:  5'- cGGCgACCgCCcGCGC-CUGGCCGGCGGCg -3'
miRNA:   3'- -UCG-UGG-GGaUGUGgGACCGGUCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.