miRNA display CGI


Results 1 - 20 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 5' -59.3 NC_004812.1 + 142290 1.08 0.001381
Target:  5'- cAGCACCCCUACACCCUGGCCAGCAACc -3'
miRNA:   3'- -UCGUGGGGAUGUGGGACCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 28075 0.72 0.378727
Target:  5'- gGGCaaccGCCUCUGCggGCCCgacacggccgccugGGCCGGCAACu -3'
miRNA:   3'- -UCG----UGGGGAUG--UGGGa-------------CCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 55979 0.72 0.383652
Target:  5'- cGCGCCgCCgUGCGCgcgauCCUGGCCGGCGc- -3'
miRNA:   3'- uCGUGG-GG-AUGUG-----GGACCGGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 98937 0.66 0.762515
Target:  5'- cGGCGCCCggaagAgACCCggGGCCgcggacgaccuguuuGGCGACg -3'
miRNA:   3'- -UCGUGGGga---UgUGGGa-CCGG---------------UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 78776 0.76 0.22067
Target:  5'- cGGCGCCCUggACGCCCUGGCgCGG-GGCg -3'
miRNA:   3'- -UCGUGGGGa-UGUGGGACCG-GUCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 85126 0.76 0.226095
Target:  5'- uGCuGCCCCUGCugcCCCUGcGCCcGCAGCa -3'
miRNA:   3'- uCG-UGGGGAUGu--GGGAC-CGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 88388 0.75 0.280127
Target:  5'- cGGC-CCCCgcGCACCCccGGCCGGCcGCg -3'
miRNA:   3'- -UCGuGGGGa-UGUGGGa-CCGGUCGuUG- -5'
21382 5' -59.3 NC_004812.1 + 148228 0.74 0.307257
Target:  5'- cGCGCCCCcGgACCCcgGGCCccGGCGGCc -3'
miRNA:   3'- uCGUGGGGaUgUGGGa-CCGG--UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 62323 0.73 0.343931
Target:  5'- cGCACCCaggcgcACGCCCgGGCC-GCGGCg -3'
miRNA:   3'- uCGUGGGga----UGUGGGaCCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 56952 0.72 0.375468
Target:  5'- cGGCGCCCUcuaccgggGCAUCCUGaGCCAGUAc- -3'
miRNA:   3'- -UCGUGGGGa-------UGUGGGAC-CGGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 99706 0.73 0.359458
Target:  5'- cGGCGgCgCCUGCGCCCagGGCUGGCcGCa -3'
miRNA:   3'- -UCGUgG-GGAUGUGGGa-CCGGUCGuUG- -5'
21382 5' -59.3 NC_004812.1 + 49865 0.73 0.339368
Target:  5'- gAGCGCCCCaugACguaguaggccucgucGCCCUcgccGCCAGCAGCa -3'
miRNA:   3'- -UCGUGGGGa--UG---------------UGGGAc---CGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 38948 0.81 0.114444
Target:  5'- cGGCACCCCccgGCGCCCggccGGCCcGCGACc -3'
miRNA:   3'- -UCGUGGGGa--UGUGGGa---CCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 103604 0.72 0.374656
Target:  5'- cGCGCCCCgggACGugcuacagccgccCCCUGGUCAGCuuCc -3'
miRNA:   3'- uCGUGGGGa--UGU-------------GGGACCGGUCGuuG- -5'
21382 5' -59.3 NC_004812.1 + 150242 0.77 0.195187
Target:  5'- cGCugCCC-GCGuCCCUGGCgGGCGGCg -3'
miRNA:   3'- uCGugGGGaUGU-GGGACCGgUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 120458 0.73 0.335599
Target:  5'- cGCACCCCUGCgccgccacggccaACCCgugGGCCuccCAGCg -3'
miRNA:   3'- uCGUGGGGAUG-------------UGGGa--CCGGuc-GUUG- -5'
21382 5' -59.3 NC_004812.1 + 8150 0.72 0.375468
Target:  5'- cGCACCCCU-CGCCCcgagcgGGCgAGgGACu -3'
miRNA:   3'- uCGUGGGGAuGUGGGa-----CCGgUCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 75246 0.72 0.383652
Target:  5'- aAGCGCgCCCUcacggcCGCCCUGGCgGGCcuGCg -3'
miRNA:   3'- -UCGUG-GGGAu-----GUGGGACCGgUCGu-UG- -5'
21382 5' -59.3 NC_004812.1 + 55396 0.76 0.215882
Target:  5'- cGGCGCCCCUGCuggcggccgcggggcCCCUGGCCccGCAGa -3'
miRNA:   3'- -UCGUGGGGAUGu--------------GGGACCGGu-CGUUg -5'
21382 5' -59.3 NC_004812.1 + 80237 0.75 0.254935
Target:  5'- cGCGCCUCgGCGCCCUGGgggCGGCGGCc -3'
miRNA:   3'- uCGUGGGGaUGUGGGACCg--GUCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.