miRNA display CGI


Results 1 - 20 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 5' -59.3 NC_004812.1 + 142290 1.08 0.001381
Target:  5'- cAGCACCCCUACACCCUGGCCAGCAACc -3'
miRNA:   3'- -UCGUGGGGAUGUGGGACCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 8047 0.81 0.114444
Target:  5'- cGGCACCCCccgGCGCCCggccGGCCcGCGACc -3'
miRNA:   3'- -UCGUGGGGa--UGUGGGa---CCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 38948 0.81 0.114444
Target:  5'- cGGCACCCCccgGCGCCCggccGGCCcGCGACc -3'
miRNA:   3'- -UCGUGGGGa--UGUGGGa---CCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 59779 0.8 0.126935
Target:  5'- cGCACCgCUcgagguagaacaGCAUCUUGGCCAGCAGCg -3'
miRNA:   3'- uCGUGGgGA------------UGUGGGACCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 51317 0.79 0.151865
Target:  5'- gGGCAgCCCUACGCCCaGGCCAGg--- -3'
miRNA:   3'- -UCGUgGGGAUGUGGGaCCGGUCguug -5'
21382 5' -59.3 NC_004812.1 + 56263 0.78 0.181162
Target:  5'- cGCGCCCCUGCGCCUc-GCCcGCGGCg -3'
miRNA:   3'- uCGUGGGGAUGUGGGacCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 150242 0.77 0.195187
Target:  5'- cGCugCCC-GCGuCCCUGGCgGGCGGCg -3'
miRNA:   3'- uCGugGGGaUGU-GGGACCGgUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 119341 0.77 0.195187
Target:  5'- cGCugCCC-GCGuCCCUGGCgGGCGGCg -3'
miRNA:   3'- uCGugGGGaUGU-GGGACCGgUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 142405 0.77 0.195187
Target:  5'- gGGCGCCCg---GCCCUGGCgCGGCGACg -3'
miRNA:   3'- -UCGUGGGgaugUGGGACCG-GUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 55396 0.76 0.215882
Target:  5'- cGGCGCCCCUGCuggcggccgcggggcCCCUGGCCccGCAGa -3'
miRNA:   3'- -UCGUGGGGAUGu--------------GGGACCGGu-CGUUg -5'
21382 5' -59.3 NC_004812.1 + 78776 0.76 0.22067
Target:  5'- cGGCGCCCUggACGCCCUGGCgCGG-GGCg -3'
miRNA:   3'- -UCGUGGGGa-UGUGGGACCG-GUCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 85126 0.76 0.226095
Target:  5'- uGCuGCCCCUGCugcCCCUGcGCCcGCAGCa -3'
miRNA:   3'- uCG-UGGGGAUGu--GGGAC-CGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 80237 0.75 0.254935
Target:  5'- cGCGCCUCgGCGCCCUGGgggCGGCGGCc -3'
miRNA:   3'- uCGUGGGGaUGUGGGACCg--GUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 88388 0.75 0.280127
Target:  5'- cGGC-CCCCgcGCACCCccGGCCGGCcGCg -3'
miRNA:   3'- -UCGuGGGGa-UGUGGGa-CCGGUCGuUG- -5'
21382 5' -59.3 NC_004812.1 + 142244 0.75 0.280127
Target:  5'- uGCGCCgCC-GCGCCCgcgcGGCCGGCAAg -3'
miRNA:   3'- uCGUGG-GGaUGUGGGa---CCGGUCGUUg -5'
21382 5' -59.3 NC_004812.1 + 135600 0.75 0.280127
Target:  5'- uGCACCCCcGCgGCCgaGGCgCGGCGGCg -3'
miRNA:   3'- uCGUGGGGaUG-UGGgaCCG-GUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 40221 0.74 0.286726
Target:  5'- cGGCgACCgCCcGCGC-CUGGCCGGCGGCg -3'
miRNA:   3'- -UCG-UGG-GGaUGUGgGACCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 140101 0.74 0.293447
Target:  5'- gAGCgcaucGCCCCcGCGCCCcccGGCCGGUGGCg -3'
miRNA:   3'- -UCG-----UGGGGaUGUGGGa--CCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 145450 0.74 0.307257
Target:  5'- uGGCACCgaCCUACAUucgCCUGGCCGaCGACg -3'
miRNA:   3'- -UCGUGG--GGAUGUG---GGACCGGUcGUUG- -5'
21382 5' -59.3 NC_004812.1 + 117327 0.74 0.307257
Target:  5'- cGCGCCCCcGgACCCcgGGCCccGGCGGCc -3'
miRNA:   3'- uCGUGGGGaUgUGGGa-CCGG--UCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.