miRNA display CGI


Results 1 - 20 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 5' -59.3 NC_004812.1 + 154 0.67 0.690182
Target:  5'- cGCGCCgCC-GCGCCCgcGGCCcGCcGCg -3'
miRNA:   3'- uCGUGG-GGaUGUGGGa-CCGGuCGuUG- -5'
21382 5' -59.3 NC_004812.1 + 676 0.69 0.532992
Target:  5'- cGCACCCCgGCGCUCccgcGGCCcggccuccucggcgcGGCAGCc -3'
miRNA:   3'- uCGUGGGGaUGUGGGa---CCGG---------------UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 2624 0.67 0.649763
Target:  5'- uGGCGCCgCg--GCCCaGGCgCGGCGGCg -3'
miRNA:   3'- -UCGUGGgGaugUGGGaCCG-GUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 2924 0.66 0.758732
Target:  5'- gAGCccGCCCCguccucgguCACCCUcGGCgGGCGc- -3'
miRNA:   3'- -UCG--UGGGGau-------GUGGGA-CCGgUCGUug -5'
21382 5' -59.3 NC_004812.1 + 2958 0.67 0.649763
Target:  5'- gAGCACgCCCUgcGCGCCCaGcGCCgagacgucgGGCGGCc -3'
miRNA:   3'- -UCGUG-GGGA--UGUGGGaC-CGG---------UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 3349 0.7 0.519302
Target:  5'- cGCGCCCC-GCGCCCcGGCCcccgccGGgAACc -3'
miRNA:   3'- uCGUGGGGaUGUGGGaCCGG------UCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 3488 0.66 0.749198
Target:  5'- gAGC-CCCCcGCGCCCgcccccgGGgCGGCGc- -3'
miRNA:   3'- -UCGuGGGGaUGUGGGa------CCgGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 3646 0.66 0.739563
Target:  5'- cGGCGCCgCCcGCGUCUgcgucGGCCAGCAGg -3'
miRNA:   3'- -UCGUGG-GGaUGUGGGa----CCGGUCGUUg -5'
21382 5' -59.3 NC_004812.1 + 3729 0.66 0.758732
Target:  5'- gAGCGCaCCUgGCGCgggCCgcgcGCCAGCAGCg -3'
miRNA:   3'- -UCGUG-GGGaUGUG---GGac--CGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 3846 0.7 0.49999
Target:  5'- cGCcCCUCUGCGCCgUGGUCGccGCGGCc -3'
miRNA:   3'- uCGuGGGGAUGUGGgACCGGU--CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 3981 0.68 0.619274
Target:  5'- aGGuCGCCgCCga-GCCCUcGGCCAGCGc- -3'
miRNA:   3'- -UC-GUGG-GGaugUGGGA-CCGGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 4200 0.7 0.49999
Target:  5'- gGGCGCCCCcgcgGCGCCC-GGCCccacGCGc- -3'
miRNA:   3'- -UCGUGGGGa---UGUGGGaCCGGu---CGUug -5'
21382 5' -59.3 NC_004812.1 + 4360 0.66 0.758732
Target:  5'- gGGCGCgCgUgcaacauggcgcGCGCCCUGGCCgaGGCGu- -3'
miRNA:   3'- -UCGUGgGgA------------UGUGGGACCGG--UCGUug -5'
21382 5' -59.3 NC_004812.1 + 4743 0.66 0.759679
Target:  5'- cGCGCCCCgggggcggcggcucgGCGCCg-GGCCA-CGGCu -3'
miRNA:   3'- uCGUGGGGa--------------UGUGGgaCCGGUcGUUG- -5'
21382 5' -59.3 NC_004812.1 + 4874 0.69 0.568744
Target:  5'- aAGCGgCCCguggcgucGCGCCC-GGCCacGGCGGCg -3'
miRNA:   3'- -UCGUgGGGa-------UGUGGGaCCGG--UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 5439 0.66 0.749198
Target:  5'- cAGCGCCcgggccgucuCCUcCACCauggaGGCCAGCAGg -3'
miRNA:   3'- -UCGUGG----------GGAuGUGGga---CCGGUCGUUg -5'
21382 5' -59.3 NC_004812.1 + 6307 0.72 0.417546
Target:  5'- cGGCGCCCCcggGCACgCggggGGCCccgggcaggaggGGCAGCa -3'
miRNA:   3'- -UCGUGGGGa--UGUGgGa---CCGG------------UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 7601 0.69 0.578789
Target:  5'- cGGCGCCgCC-GCGCCC-GGCCcGCcGCa -3'
miRNA:   3'- -UCGUGG-GGaUGUGGGaCCGGuCGuUG- -5'
21382 5' -59.3 NC_004812.1 + 8047 0.81 0.114444
Target:  5'- cGGCACCCCccgGCGCCCggccGGCCcGCGACc -3'
miRNA:   3'- -UCGUGGGGa--UGUGGGa---CCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 8150 0.72 0.375468
Target:  5'- cGCACCCCU-CGCCCcgagcgGGCgAGgGACu -3'
miRNA:   3'- uCGUGGGGAuGUGGGa-----CCGgUCgUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.