miRNA display CGI


Results 1 - 20 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 5' -59.3 NC_004812.1 + 156564 0.67 0.690182
Target:  5'- cGCGCCgCC-GCGCCCgcGGCCcGCcGCg -3'
miRNA:   3'- uCGUGG-GGaUGUGGGa-CCGGuCGuUG- -5'
21382 5' -59.3 NC_004812.1 + 156305 0.66 0.757783
Target:  5'- uGGUugCCC-GCGCUCUcgggcgcGGCCGGaCGGCg -3'
miRNA:   3'- -UCGugGGGaUGUGGGA-------CCGGUC-GUUG- -5'
21382 5' -59.3 NC_004812.1 + 156155 0.67 0.700189
Target:  5'- aGGCGCgCCgGCgGCCCgGGCUcGCGGCg -3'
miRNA:   3'- -UCGUGgGGaUG-UGGGaCCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 155873 0.69 0.529067
Target:  5'- cGCGCCgCCccCACCCccGCCGGCGACc -3'
miRNA:   3'- uCGUGG-GGauGUGGGacCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 155793 0.66 0.729835
Target:  5'- cGgACCCCcaggAC-CCCcGGCCGGgCGGCg -3'
miRNA:   3'- uCgUGGGGa---UGuGGGaCCGGUC-GUUG- -5'
21382 5' -59.3 NC_004812.1 + 155657 0.66 0.749198
Target:  5'- gGGCuCCCCUAgGCCUccacaGCCGGgAGCg -3'
miRNA:   3'- -UCGuGGGGAUgUGGGac---CGGUCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 155319 0.66 0.729835
Target:  5'- cGGCGCCCCgccuccggGgACCCUgggGGCCGGa--- -3'
miRNA:   3'- -UCGUGGGGa-------UgUGGGA---CCGGUCguug -5'
21382 5' -59.3 NC_004812.1 + 154666 0.66 0.723958
Target:  5'- uGCACCCgUccccccgacgggcggACGCCCcGGCCGG-AGCc -3'
miRNA:   3'- uCGUGGGgA---------------UGUGGGaCCGGUCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 153979 0.7 0.49999
Target:  5'- cGCGCCgCCgccGCGCCUgGGCC-GCGGCg -3'
miRNA:   3'- uCGUGG-GGa--UGUGGGaCCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 153584 0.72 0.378727
Target:  5'- gGGCaaccGCCUCUGCggGCCCgacacggccgccugGGCCGGCAACu -3'
miRNA:   3'- -UCG----UGGGGAUG--UGGGa-------------CCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 152722 0.67 0.690182
Target:  5'- cGCGCCC--GCGCCuCUGGCUGcGCGAg -3'
miRNA:   3'- uCGUGGGgaUGUGG-GACCGGU-CGUUg -5'
21382 5' -59.3 NC_004812.1 + 152201 0.68 0.60912
Target:  5'- cGCACCUgggCUACGCCaUGGCCGcCGGCc -3'
miRNA:   3'- uCGUGGG---GAUGUGGgACCGGUcGUUG- -5'
21382 5' -59.3 NC_004812.1 + 152087 0.66 0.749198
Target:  5'- cGGcCGCCCagcagcGCGCCCUGGUcgaaCAGCAu- -3'
miRNA:   3'- -UC-GUGGGga----UGUGGGACCG----GUCGUug -5'
21382 5' -59.3 NC_004812.1 + 151986 0.67 0.700189
Target:  5'- cGCGCCCgUguggGCGCCCgagcugGGCgAcGCGGCg -3'
miRNA:   3'- uCGUGGGgA----UGUGGGa-----CCGgU-CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 151809 0.71 0.431606
Target:  5'- gGGCGCCuUCUACGCCCgcuaccgcgacggGuacGCCAGCGGCg -3'
miRNA:   3'- -UCGUGG-GGAUGUGGGa------------C---CGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 151684 0.67 0.649763
Target:  5'- cAGCGCCgCCU---CCCgGGCC-GCAGCg -3'
miRNA:   3'- -UCGUGG-GGAuguGGGaCCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 151270 0.67 0.700189
Target:  5'- cGCGCCCCcGCcgACCCcGGgCGGCGc- -3'
miRNA:   3'- uCGUGGGGaUG--UGGGaCCgGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 151191 0.68 0.629438
Target:  5'- cGCuguCCCCgccguCGUCCgcggGGCCGGCGACg -3'
miRNA:   3'- uCGu--GGGGau---GUGGGa---CCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 150949 0.69 0.568744
Target:  5'- cGUGCCCCUGCGggcucCCCUcGcGCCcGGCGACc -3'
miRNA:   3'- uCGUGGGGAUGU-----GGGA-C-CGG-UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 150880 0.66 0.749198
Target:  5'- cGGCGCCCg-GCGCCCUccuCCcGCGGCa -3'
miRNA:   3'- -UCGUGGGgaUGUGGGAcc-GGuCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.