miRNA display CGI


Results 21 - 40 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 5' -59.3 NC_004812.1 + 8258 0.69 0.529067
Target:  5'- cGC-CCCCggggGCGCCgggGGCCGGcCGACg -3'
miRNA:   3'- uCGuGGGGa---UGUGGga-CCGGUC-GUUG- -5'
21382 5' -59.3 NC_004812.1 + 8374 0.67 0.680127
Target:  5'- cGC-CCCCUGCucccCCCgccGGCCacccaAGCGGCc -3'
miRNA:   3'- uCGuGGGGAUGu---GGGa--CCGG-----UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 9001 0.7 0.519302
Target:  5'- aGGCGCCaagCUGagGCCCcgGGCCAGCAu- -3'
miRNA:   3'- -UCGUGGg--GAUg-UGGGa-CCGGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 9449 0.67 0.700189
Target:  5'- uGCGCCUUcuggUGCugUCUGGCCcacgccGCGACg -3'
miRNA:   3'- uCGUGGGG----AUGugGGACCGGu-----CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 10089 0.66 0.710139
Target:  5'- cAGgACCCCUAUcaccaGCCC-GGCCAGg--- -3'
miRNA:   3'- -UCgUGGGGAUG-----UGGGaCCGGUCguug -5'
21382 5' -59.3 NC_004812.1 + 11044 0.7 0.509608
Target:  5'- gGGCGCCgCCggugGCGCCCgaccccgGGaCCAGCGc- -3'
miRNA:   3'- -UCGUGG-GGa---UGUGGGa------CC-GGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 12973 0.7 0.481004
Target:  5'- cGGCGCUCC-GCGCCCggGGCCGcGCucGCg -3'
miRNA:   3'- -UCGUGGGGaUGUGGGa-CCGGU-CGu-UG- -5'
21382 5' -59.3 NC_004812.1 + 13045 0.67 0.680127
Target:  5'- gGGCcgGCCCCgguCGCCC---CCAGCGACa -3'
miRNA:   3'- -UCG--UGGGGau-GUGGGaccGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 13086 0.72 0.40037
Target:  5'- cAGCGCCCCcaugcgcucgUACGCCCgGGCCcGCcuCg -3'
miRNA:   3'- -UCGUGGGG----------AUGUGGGaCCGGuCGuuG- -5'
21382 5' -59.3 NC_004812.1 + 14421 0.66 0.720024
Target:  5'- cGGCcaGCCCC-GCGCC--GGCCAGCGc- -3'
miRNA:   3'- -UCG--UGGGGaUGUGGgaCCGGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 14783 0.69 0.5389
Target:  5'- cGCGuCCCCgccgacccGCGCCaUGGCCgAGCGGCa -3'
miRNA:   3'- uCGU-GGGGa-------UGUGGgACCGG-UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 15744 0.7 0.519302
Target:  5'- -cCACCCCcGCGCCUUGcgcGCCuGCGGCa -3'
miRNA:   3'- ucGUGGGGaUGUGGGAC---CGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 15987 0.71 0.462375
Target:  5'- cGGCgccgACCCCgcgGCCCcGcGCCAGCAGCa -3'
miRNA:   3'- -UCG----UGGGGaugUGGGaC-CGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 16018 0.67 0.649763
Target:  5'- cGGCGCCCaugGCGgCCagGGUCAGCGcGCa -3'
miRNA:   3'- -UCGUGGGga-UGUgGGa-CCGGUCGU-UG- -5'
21382 5' -59.3 NC_004812.1 + 16095 0.66 0.7269
Target:  5'- cGGCACCaucgagcgCCUGCGCgagacgaacacggaCCUGGCgAcGCAGCu -3'
miRNA:   3'- -UCGUGG--------GGAUGUG--------------GGACCGgU-CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 16168 0.71 0.435164
Target:  5'- cGGCGCgCCCgacuggggGCGCUCgaucGCCAGCAGCg -3'
miRNA:   3'- -UCGUG-GGGa-------UGUGGGac--CGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 16753 0.67 0.69919
Target:  5'- gGGCGCCCCggGgGCCgCgGGCCcgaagacgcguggGGCGGCc -3'
miRNA:   3'- -UCGUGGGGa-UgUGG-GaCCGG-------------UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 16911 0.68 0.619274
Target:  5'- aGGCGCUgCUGCGCa-UGGCCuGCGAg -3'
miRNA:   3'- -UCGUGGgGAUGUGggACCGGuCGUUg -5'
21382 5' -59.3 NC_004812.1 + 17527 0.71 0.462375
Target:  5'- cGGCuCCCCgUGCaACCCagGGCCAGCcuCg -3'
miRNA:   3'- -UCGuGGGG-AUG-UGGGa-CCGGUCGuuG- -5'
21382 5' -59.3 NC_004812.1 + 17970 0.66 0.710139
Target:  5'- cAGCGCUCCgcgaaACACCgccuccauCUcGGCCAGCAc- -3'
miRNA:   3'- -UCGUGGGGa----UGUGG--------GA-CCGGUCGUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.