miRNA display CGI


Results 41 - 60 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 5' -59.3 NC_004812.1 + 97440 0.72 0.383652
Target:  5'- cGGCAUCaaggccugCCUGCGCCCgucggacgGcGCCAGCGGCa -3'
miRNA:   3'- -UCGUGG--------GGAUGUGGGa-------C-CGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 124144 0.72 0.391953
Target:  5'- cGCGCCUC-ACGCgCCUGuGCCGGCAc- -3'
miRNA:   3'- uCGUGGGGaUGUG-GGAC-CGGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 126327 0.72 0.391953
Target:  5'- aGGgACCCCUcggcgugcuGCGCCCUGGgcCCGGgGGCg -3'
miRNA:   3'- -UCgUGGGGA---------UGUGGGACC--GGUCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 71097 0.72 0.395306
Target:  5'- aGGCGCCCaaACACCCgcuccagGGCCgacuccagcccccgcGGCGGCa -3'
miRNA:   3'- -UCGUGGGgaUGUGGGa------CCGG---------------UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 105079 0.72 0.40037
Target:  5'- uGGCcCCCCgGCGCCgCUGcGCCGGgGGCg -3'
miRNA:   3'- -UCGuGGGGaUGUGG-GAC-CGGUCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 13086 0.72 0.40037
Target:  5'- cAGCGCCCCcaugcgcucgUACGCCCgGGCCcGCcuCg -3'
miRNA:   3'- -UCGUGGGG----------AUGUGGGaCCGGuCGuuG- -5'
21382 5' -59.3 NC_004812.1 + 106708 0.72 0.408902
Target:  5'- cGgGCCCCgggGgGCCCUcggGGUCGGCGGCg -3'
miRNA:   3'- uCgUGGGGa--UgUGGGA---CCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 79377 0.72 0.408902
Target:  5'- cAGCGCCCC-ACACCCccGcGUCGGCcGCg -3'
miRNA:   3'- -UCGUGGGGaUGUGGGa-C-CGGUCGuUG- -5'
21382 5' -59.3 NC_004812.1 + 67609 0.72 0.408902
Target:  5'- cGCACUCCUuccaguucaucaGgGCCgUGGCCAGgGACg -3'
miRNA:   3'- uCGUGGGGA------------UgUGGgACCGGUCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 108887 0.72 0.408902
Target:  5'- cAGCACCCCgcCGCCUcGcGCCGGCcgGGCg -3'
miRNA:   3'- -UCGUGGGGauGUGGGaC-CGGUCG--UUG- -5'
21382 5' -59.3 NC_004812.1 + 37208 0.72 0.417546
Target:  5'- cGGCGCCCCcggGCACgCggggGGCCccgggcaggaggGGCAGCa -3'
miRNA:   3'- -UCGUGGGGa--UGUGgGa---CCGG------------UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 142173 0.72 0.417546
Target:  5'- gGGCGCCaUCguugGCGCgCUGGCCGGCGc- -3'
miRNA:   3'- -UCGUGG-GGa---UGUGgGACCGGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 19806 0.72 0.417546
Target:  5'- gGGCgGCUCCUcgcugcugcGCAUCUcGGCCAGCAGCu -3'
miRNA:   3'- -UCG-UGGGGA---------UGUGGGaCCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 112452 0.72 0.417546
Target:  5'- cGGC-CCCCgaGCGCCCUccGGCCguccGGCGACc -3'
miRNA:   3'- -UCGuGGGGa-UGUGGGA--CCGG----UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 6307 0.72 0.417546
Target:  5'- cGGCGCCCCcggGCACgCggggGGCCccgggcaggaggGGCAGCa -3'
miRNA:   3'- -UCGUGGGGa--UGUGgGa---CCGG------------UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 96370 0.71 0.426301
Target:  5'- gAGCGCCgCCUGgcguCGgUCaUGGCCGGCGACg -3'
miRNA:   3'- -UCGUGG-GGAU----GUgGG-ACCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 90193 0.71 0.426301
Target:  5'- cGCugCCCUucgaccuggagcGCACCgUGGCCGaCAACu -3'
miRNA:   3'- uCGugGGGA------------UGUGGgACCGGUcGUUG- -5'
21382 5' -59.3 NC_004812.1 + 78997 0.71 0.426301
Target:  5'- cAGCGCCaagGCGCUgCUGGCCGGgGACg -3'
miRNA:   3'- -UCGUGGggaUGUGG-GACCGGUCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 151809 0.71 0.431606
Target:  5'- gGGCGCCuUCUACGCCCgcuaccgcgacggGuacGCCAGCGGCg -3'
miRNA:   3'- -UCGUGG-GGAUGUGGGa------------C---CGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 26301 0.71 0.431606
Target:  5'- gGGCGCCuUCUACGCCCgcuaccgcgacggGuacGCCAGCGGCg -3'
miRNA:   3'- -UCGUGG-GGAUGUGGGa------------C---CGGUCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.