miRNA display CGI


Results 41 - 60 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 5' -59.3 NC_004812.1 + 84411 0.66 0.749198
Target:  5'- cGGaCGCCCCgcgACgACCCggGGCCcccGGCcGCa -3'
miRNA:   3'- -UC-GUGGGGa--UG-UGGGa-CCGG---UCGuUG- -5'
21382 5' -59.3 NC_004812.1 + 121186 0.66 0.749198
Target:  5'- cGGcCGCCCagcagcGCGCCCUGGUcgaaCAGCAu- -3'
miRNA:   3'- -UC-GUGGGga----UGUGGGACCG----GUCGUug -5'
21382 5' -59.3 NC_004812.1 + 5439 0.66 0.749198
Target:  5'- cAGCGCCcgggccgucuCCUcCACCauggaGGCCAGCAGg -3'
miRNA:   3'- -UCGUGG----------GGAuGUGGga---CCGGUCGUUg -5'
21382 5' -59.3 NC_004812.1 + 68007 0.66 0.747279
Target:  5'- cGCGCCCCgugaaaGCACagggcguugcuggUCUGcaucgccGCCAGCAGCa -3'
miRNA:   3'- uCGUGGGGa-----UGUG-------------GGAC-------CGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 63521 0.66 0.746318
Target:  5'- aAGCGCCCgCUGgGCCCgagcuccagggucgUggguccGGCCGGCAGg -3'
miRNA:   3'- -UCGUGGG-GAUgUGGG--------------A------CCGGUCGUUg -5'
21382 5' -59.3 NC_004812.1 + 58252 0.66 0.746318
Target:  5'- cGUACCUg-GCGCCCUacgacgaggacgacGGCCGGuCGGCg -3'
miRNA:   3'- uCGUGGGgaUGUGGGA--------------CCGGUC-GUUG- -5'
21382 5' -59.3 NC_004812.1 + 139838 0.66 0.739563
Target:  5'- gGGC-CCCCU-CACCCUccGGCCcccGCGc- -3'
miRNA:   3'- -UCGuGGGGAuGUGGGA--CCGGu--CGUug -5'
21382 5' -59.3 NC_004812.1 + 56331 0.66 0.739563
Target:  5'- cGCGCCgCCUccgagaACCCggaGGCguGCGGCa -3'
miRNA:   3'- uCGUGG-GGAug----UGGGa--CCGguCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 69847 0.66 0.739563
Target:  5'- cGCGCCCgcgucgcgCUGCGCCaUGGCCGacGCGGa -3'
miRNA:   3'- uCGUGGG--------GAUGUGGgACCGGU--CGUUg -5'
21382 5' -59.3 NC_004812.1 + 3646 0.66 0.739563
Target:  5'- cGGCGCCgCCcGCGUCUgcgucGGCCAGCAGg -3'
miRNA:   3'- -UCGUGG-GGaUGUGGGa----CCGGUCGUUg -5'
21382 5' -59.3 NC_004812.1 + 19256 0.66 0.739563
Target:  5'- uGGCGCCCagcaGCugCCgGGCgAGCGc- -3'
miRNA:   3'- -UCGUGGGga--UGugGGaCCGgUCGUug -5'
21382 5' -59.3 NC_004812.1 + 129154 0.66 0.739563
Target:  5'- cGGCGCCgCCcGCGUCUgcgucGGCCAGCAGg -3'
miRNA:   3'- -UCGUGG-GGaUGUGGGa----CCGGUCGUUg -5'
21382 5' -59.3 NC_004812.1 + 135482 0.66 0.738594
Target:  5'- cGGCACgCC-ACACacggccgCCUGGCUGGguGCg -3'
miRNA:   3'- -UCGUGgGGaUGUG-------GGACCGGUCguUG- -5'
21382 5' -59.3 NC_004812.1 + 59348 0.66 0.736654
Target:  5'- aGGCACCCCgcguuaaacuccgucCACCC-GGCCccGCAGg -3'
miRNA:   3'- -UCGUGGGGau-------------GUGGGaCCGGu-CGUUg -5'
21382 5' -59.3 NC_004812.1 + 76525 0.66 0.733737
Target:  5'- cGGCugCCUggucgaggGCggggcguggacgcggGCCUcGGCCGGCAGCg -3'
miRNA:   3'- -UCGugGGGa-------UG---------------UGGGaCCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 155793 0.66 0.729835
Target:  5'- cGgACCCCcaggAC-CCCcGGCCGGgCGGCg -3'
miRNA:   3'- uCgUGGGGa---UGuGGGaCCGGUC-GUUG- -5'
21382 5' -59.3 NC_004812.1 + 29811 0.66 0.729835
Target:  5'- cGGCGCCCCgccuccggGgACCCUgggGGCCGGa--- -3'
miRNA:   3'- -UCGUGGGGa-------UgUGGGA---CCGGUCguug -5'
21382 5' -59.3 NC_004812.1 + 37661 0.66 0.729835
Target:  5'- cGCAgUCCcACACCagcggGGgCAGCAGCg -3'
miRNA:   3'- uCGUgGGGaUGUGGga---CCgGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 75090 0.66 0.729835
Target:  5'- gAGCGCgCCUGCuccagcgUCUUGGCC-GCGGCc -3'
miRNA:   3'- -UCGUGgGGAUGu------GGGACCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 155319 0.66 0.729835
Target:  5'- cGGCGCCCCgccuccggGgACCCUgggGGCCGGa--- -3'
miRNA:   3'- -UCGUGGGGa-------UgUGGGA---CCGGUCguug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.