miRNA display CGI


Results 21 - 40 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 5' -59.3 NC_004812.1 + 5439 0.66 0.749198
Target:  5'- cAGCGCCcgggccgucuCCUcCACCauggaGGCCAGCAGg -3'
miRNA:   3'- -UCGUGG----------GGAuGUGGga---CCGGUCGUUg -5'
21382 5' -59.3 NC_004812.1 + 63083 0.66 0.749198
Target:  5'- cGCACCC--GCGCCCcgccucGGCCuucgucaccucgAGCGACg -3'
miRNA:   3'- uCGUGGGgaUGUGGGa-----CCGG------------UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 143323 0.66 0.749198
Target:  5'- cGGaCGCCCCgccGCGCCgaGGCCuccGCcGCc -3'
miRNA:   3'- -UC-GUGGGGa--UGUGGgaCCGGu--CGuUG- -5'
21382 5' -59.3 NC_004812.1 + 142918 0.66 0.749198
Target:  5'- cAGCcCCuCCUGCggGCCCgcgGGCCcGCuAACg -3'
miRNA:   3'- -UCGuGG-GGAUG--UGGGa--CCGGuCG-UUG- -5'
21382 5' -59.3 NC_004812.1 + 41774 0.66 0.749198
Target:  5'- uGGCGCgCC-GCGCCUcGGCCgcucgGGCGGCc -3'
miRNA:   3'- -UCGUGgGGaUGUGGGaCCGG-----UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 130947 0.66 0.749198
Target:  5'- cAGCGCCCgggccgucucCUcCACCauggaGGCCAGCAGg -3'
miRNA:   3'- -UCGUGGG----------GAuGUGGga---CCGGUCGUUg -5'
21382 5' -59.3 NC_004812.1 + 145315 0.66 0.749198
Target:  5'- cGGCGCCCCgcgcgGCGCgCCUcgugGGCguGCu-- -3'
miRNA:   3'- -UCGUGGGGa----UGUG-GGA----CCGguCGuug -5'
21382 5' -59.3 NC_004812.1 + 34389 0.66 0.749198
Target:  5'- gAGC-CCCCcGCGCCCgcccccgGGgCGGCGc- -3'
miRNA:   3'- -UCGuGGGGaUGUGGGa------CCgGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 36533 0.66 0.749198
Target:  5'- cGCACCgC--CGCCgUGGCCAcgGCGGCc -3'
miRNA:   3'- uCGUGGgGauGUGGgACCGGU--CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 3488 0.66 0.749198
Target:  5'- gAGC-CCCCcGCGCCCgcccccgGGgCGGCGc- -3'
miRNA:   3'- -UCGuGGGGaUGUGGGa------CCgGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 84411 0.66 0.749198
Target:  5'- cGGaCGCCCCgcgACgACCCggGGCCcccGGCcGCa -3'
miRNA:   3'- -UC-GUGGGGa--UG-UGGGa-CCGG---UCGuUG- -5'
21382 5' -59.3 NC_004812.1 + 150880 0.66 0.749198
Target:  5'- cGGCGCCCg-GCGCCCUccuCCcGCGGCa -3'
miRNA:   3'- -UCGUGGGgaUGUGGGAcc-GGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 96999 0.66 0.749198
Target:  5'- -cCACCCCcACGCCCUcuaGcGCC-GCGACc -3'
miRNA:   3'- ucGUGGGGaUGUGGGA---C-CGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 125007 0.66 0.749198
Target:  5'- aGGCGCCCCUGCGC---GGCgC-GCGGCc -3'
miRNA:   3'- -UCGUGGGGAUGUGggaCCG-GuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 48662 0.66 0.749198
Target:  5'- cGCGCCUCgccGCGCgaUGGCCGGCc-- -3'
miRNA:   3'- uCGUGGGGa--UGUGggACCGGUCGuug -5'
21382 5' -59.3 NC_004812.1 + 155657 0.66 0.749198
Target:  5'- gGGCuCCCCUAgGCCUccacaGCCGGgAGCg -3'
miRNA:   3'- -UCGuGGGGAUgUGGGac---CGGUCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 119979 0.66 0.749198
Target:  5'- cGGCGCCCg-GCGCCCUccuCCcGCGGCa -3'
miRNA:   3'- -UCGUGGGgaUGUGGGAcc-GGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 30148 0.66 0.749198
Target:  5'- gGGCuCCCCUAgGCCUccacaGCCGGgAGCg -3'
miRNA:   3'- -UCGuGGGGAUgUGGGac---CGGUCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 92505 0.66 0.749198
Target:  5'- cGGCGgCCCgGCuuCCggGGuCCGGCGACg -3'
miRNA:   3'- -UCGUgGGGaUGugGGa-CC-GGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 88828 0.66 0.749198
Target:  5'- cGCGCCCCUcuuCACCaacaUGuuCAGCAAg -3'
miRNA:   3'- uCGUGGGGAu--GUGGg---ACcgGUCGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.